Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1445 ATGTATAAGACGAGAAAACGGCGTCGCTTGCCGCTGCCTGTCTCCAAGTGCCACCTGCGAGGGAGTCTAGTGGGTTTCGAATTCAAAGTGTACAGCATCAAACCCTCCTTTCGGTCCTTCAATGTCTTTCCTCTTATAGAAGGTCTCACAACGTTTGCCTCTCTCTCTACCAAACTAGCGTGCCCTCATGGGCGTGAAGCATTTGTGGGATATCCTCGAATCCTGCAAGAAAACAGTTCCACTTCACCATCTCCATCCAGGAACAAGAGGATATGCATAGACCTCTCGTGTTGGATGGTGCAACTTCAGAATGTGAGCAAATCACACTCGTGTTTGAAGGAGAAAGTCTACCTCAGTGGTCTCTTTCACCGCCTCAGAGCTCTCATCGCTTTAAATTGCAGCTTAATTTTCGTTACAGATGGATCAATTCCTGCCATCAAATTATCAACTTATAGGCAGCGCTTAAACTCTGGAAAAGACGTAGCCCAAAACGAAAGTGACTTACAGAAAGTGTCTTCATTACGGAGAAACATGGGATCTGAGTTTTCATGCATGATAAAAGAGGCTAACGTCTTGGGGATGGCTCTTGGCATCCCTTGTTTGAATGGGATTGAAGAAGCGGAAGCTCAGTGTGCTTTGTTGAACTCTGAATTATTATGTGATGGATGTTTCAGTTCAGATTCAGATATCTTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGGGATGGTGGATATGTTGTTTGCTATGAGATGGAAGACATTGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATCGCTCTTGCCTTACTTCTTGGCAGTGATTACAATCAAGGAGTTTATGGTCTGGGTCCGGAGTCAGCGTTTCAGATAGTCAAATCAATTGGGGACAAATTTGTGCTTCAAAAAATTGCTTTTGAAGGACTTGACTGTCTGAAAAGACTAAAAGGTGCAAAGAAACCGGGGCAAGTTTCCAAGAGCAACAAAGAAAATATATTTGTCCATGATATGAAATTGAGTTGCGGAGGTCAGAGTAATTCACAAAAAGATATGCAAGTTATCAATGCTTATACGAAGCCAAAATGCCACCCAGCAGATTCTGATATTGTGATGAGGGTTCTTGCTCAATATCCATTTCAACGTAATAAACTTTGTCAGATATGTGCTGAATTCTTTCAGTGGCCTCCAGAGAAAACAGATGAGTATATCCTTCCAAAGATTGCTGAAAGAGATTTACGCCGATTTGCCAATTTGCGCTTAACTTCATCAGAAGTAGGATTGAAACTTCTTTTAAATGAGATCCCAGTGAAGTGTCCTGTGTCAGAAATTATTAAGAGTCGAAAAGTTCAGGGAAGAGAATGCTATGAGGTGTCATGGAATGAAATGGATGGACTTGGAACTTCAATAGTACCTGCAGATCTTTTGGAAAGTGCCTGTCGTGAGAAGATTGTAGAGTTTGAGGAGAAGAAAGCTCAACTGAAGAAACAAAATGTTCAAAAAAGAAGACCAAAGAAAACTGAGACTGCATCTTCTGTGGCTGAACTTGACCTGAAACTGAAGAATTTGTTGCTGGATATCAATCTGGGAGGCCATGCTAACCATAATGCCTCTGATTTGTCGGAACAGCCAGTTCAAGATACAACTGCTGTGGATGAAGCTTATGTGAATAACCGAGACTTCTTGTATTCATCACATGATGAAGAACAGATTGGGCGGAATCAGAATATCAGCAACATATCTAACAATCAGGGCAATTCCAAAATAGCTAGAAATGAGGTCATTGATCTACTGAGCCCTTCCCCACCTAAGCAGTCCCGTGCGTCCTCCAAATGTCAAAAATCTAATGGTGAAATGATTGAGGTGATTAATTTGAGTGACTCAGATAATGACACGTCGCCTGAACATAAGAGGAAAGCAAAAGAGCTGAGATTGTTCTTGGCGAGTATTAGAAATGATATCCATTGA 1977 0.4163 MYKTRKRRRLPLPVSKCHLRGSLVGFEFKVYSIKPSFRSFNVFPLIEGLTTFASLSTKLACPHGREAFVGYPRILQENSSTSPSPSRNKRICIDLSCWMVQLQNVSKSHSCLKEKVYLSGLFHRLRALIALNCSLIFVTDGSIPAIKLSTYRQRLNSGKDVAQNESDLQKVSSLRRNMGSEFSCMIKEANVLGMALGIPCLNGIEEAEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMEDIERKLGFGRDSLIALALLLGSDYNQGVYGLGPESAFQIVKSIGDKFVLQKIAFEGLDCLKRLKGAKKPGQVSKSNKENIFVHDMKLSCGGQSNSQKDMQVINAYTKPKCHPADSDIVMRVLAQYPFQRNKLCQICAEFFQWPPEKTDEYILPKIAERDLRRFANLRLTSSEVGLKLLLNEIPVKCPVSEIIKSRKVQGRECYEVSWNEMDGLGTSIVPADLLESACREKIVEFEEKKAQLKKQNVQKRRPKKTETASSVAELDLKLKNLLLDINLGGHANHNASDLSEQPVQDTTAVDEAYVNNRDFLYSSHDEEQIGRNQNISNISNNQGNSKIARNEVIDLLSPSPPKQSRASSKCQKSNGEMIEVINLSDSDNDTSPEHKRKAKELRLFLASIRNDIH 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1445 658 Pfam XPG N-terminal domain 85 155 IPR006085 GO:0004518
Dere06g1445 658 SUPERFAMILY Chromo domain-like 443 497 IPR016197 -
Dere06g1445 658 FunFam Flap endonuclease GEN-like 1 264 321 - -
Dere06g1445 658 Gene3D - 72 263 - -
Dere06g1445 658 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 264 422 IPR036279 -
Dere06g1445 658 CDD PIN_GEN1 74 262 - -
Dere06g1445 658 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 193 210 IPR006084 -
Dere06g1445 658 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 214 234 IPR006084 -
Dere06g1445 658 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 88 102 IPR006084 -
Dere06g1445 658 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 135 154 IPR006084 -
Dere06g1445 658 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 269 284 IPR006084 -
Dere06g1445 658 SMART xpgineu 194 264 IPR006086 GO:0004518
Dere06g1445 658 SMART xpgn3 67 161 IPR006085 GO:0004518
Dere06g1445 658 CDD H3TH_XPG-like 267 303 - -
Dere06g1445 658 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 84 604 IPR006084 -
Dere06g1445 658 Gene3D - 265 337 - -
Dere06g1445 658 Coils Coil 480 500 - -
Dere06g1445 658 Pfam XPG I-region 197 279 IPR006086 GO:0004518
Dere06g1445 658 SUPERFAMILY PIN domain-like 76 279 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1445 Dere-ChrDere06 27327602 27336342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1445 117 300 Core DNA Replication Machinery Family AT5G26680 26.667 1.02e-11 65.5