Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1415 ATGTTCTGGTTAGGGTTTCGAAGATTTCGTGACTTTTGCTGGCGAAGATCTGATTATTATCTGGGTCGATCTGTTCTGGAAGGGAAAATGAGGCCTATTTTCTGTGGAAACTTTGAATATGATGCTCGGCAGTCTGATCTGGAACGGCTTTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCCTTTATCTATATGGAAGATGAGAGAGATGCTGAGGATGCAATTCGTGCACTTGATCGGATTGAATTTGGTCGTAAGGGACGCAGACTTCGTGTGGAATGGACAAAACATGAACGCGGCATAAGAAGGCCTGGTGGTTCAAGAAGATCTTCAGCAAATTTGAGGCCATCAAAGACTTTATTTGTTATTAATTTTGATACATACCATACCAGGACTAGGGATTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCATTTGTCCAATATGAATCAGAGGATGATGCCATCAGAGCATTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCAGTTGAATTTGCTGTGAAGGATGATGATGATAGGCGAAATGGATATAGCCCTGATAGAAGCTATGATCGCCTACATGATAGAAGTCGTGATAGAAGGCGATCACCCAGTCCTTATCGCAGAGAAAGGGGTAGCCCTGATTATGGCCATGGCTCTAGCCCATATAGGAGAGAGAATAACAGCCCTGACTATGGTCGTAGCCGAAGCCGCAGCCGAAGTCCTCGTCAGATCGAGAGATCTAGCCCTGATTATAATCGCAGGAGCCGTAGTCCATATAGAAGAGAGAGGGACAATTCTGACCCTGTTCGTGGCCCTAGCCACAGTCCTTACCACAAAGAGCGAGCCAGAACTGACTGTGGCAACTCTCCCTCTCATAGCCCTAATGGAAGAGAGAGAGTAAGCCCTCAAAATGGTCATGGTTCCAGCCGTAGTCCTTACTATAGGAAGATGGCTAGCCCTGAAAATGGCCATGACTCTAGAAGTAGTCCTGGTGCAAGAGGGGATCCTAGTCCTTACAATGGTGATGGAGGTAGCCCGAATTCTATGCCTGAGCCCAAGGACAGTCCCAACTATGGTGCTCCTGAGAGTCCCACAAATGAAAGATACCGCAGCCATTCACCCGCTGCTGAAGAATGA 1200 0.4608 MFWLGFRRFRDFCWRRSDYYLGRSVLEGKMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRIEFGRKGRRLRVEWTKHERGIRRPGGSRRSSANLRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDAIRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPDRSYDRLHDRSRDRRRSPSPYRRERGSPDYGHGSSPYRRENNSPDYGRSRSRSRSPRQIERSSPDYNRRSRSPYRRERDNSDPVRGPSHSPYHKERARTDCGNSPSHSPNGRERVSPQNGHGSSRSPYYRKMASPENGHDSRSSPGARGDPSPYNGDGGSPNSMPEPKDSPNYGAPESPTNERYRSHSPAAEE 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1415 399 MobiDBLite consensus disorder prediction 197 235 - -
Dere06g1415 399 FunFam Serine/arginine-rich splicing factor RS31 116 206 - -
Dere06g1415 399 SMART rrm1_1 32 99 IPR000504 GO:0003723
Dere06g1415 399 SMART rrm1_1 125 191 IPR000504 GO:0003723
Dere06g1415 399 MobiDBLite consensus disorder prediction 249 307 - -
Dere06g1415 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 195 IPR000504 GO:0003723
Dere06g1415 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 91 IPR000504 GO:0003723
Dere06g1415 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 188 IPR000504 GO:0003723
Dere06g1415 399 SUPERFAMILY RNA-binding domain, RBD 31 199 IPR035979 GO:0003676
Dere06g1415 399 MobiDBLite consensus disorder prediction 308 331 - -
Dere06g1415 399 Gene3D - 117 205 IPR012677 -
Dere06g1415 399 Gene3D - 26 116 IPR012677 -
Dere06g1415 399 FunFam Serine/arginine-rich splicing factor RS31 30 114 - -
Dere06g1415 399 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 125 337 - -
Dere06g1415 399 CDD RRM1_AtRSp31_like 31 102 - -
Dere06g1415 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 103 IPR000504 GO:0003723
Dere06g1415 399 MobiDBLite consensus disorder prediction 197 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1415 Dere-ChrDere06 26965472 26969873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1415 33 190 Eukaryotic Initiation Factors Gene Family AT4G34110 24.277 1.89e-08 54.3