Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1411 ATGGATAGCAACCCTCCCTCTGGAAATTTGAATCAACTAGACCAACCTTCTGCTTCTCCTCCTCCTCCTTCTTTACAAGTGCTTGCATCTCGTGAGTCTTCTTCTTCGTCTCCGAGGCCCCTGCGATCTCCAGGTGGGTCGTCGTTGTCGTCGTCGACGGCGGCTGCTCAGCATGCCAGCCGGAGGCACGCGACGTTCCGGGGGATCCGGAGTCGGAGTGGGAAATGGGTGTCCGAGATACGGGAGCCACGTAAAACCACGCGCATTTGGCTCGGGACCTATCCGACGCCGGAGATGGCTGCGGCGGCCTATGATGTGGCGGCTCTTGCATTGAAAGGGCCGGATACGCACCTCAACTTCCCTAATTTGATTCTCTCTTACCCGATCCCGGCGTCATTGTCGGCGACGGATATCCGGGCTGCCGCGGCTGCCGCCGCTGAGGCGAGGCTGGTGAGGTCTGCGGAAAGCGGCGGACAGAACGTGGGAGAAGGATCAGGGAGCCAAGCCGAGGGCTCGAGCCGTGGGGAAGTCGTCGTGAAAAGCGAGGAATTCATCGACGAGGACGAGCTTTTGAATATGCCGAGTTTGCTGGATGATATGGCGAGGGGAATGCAGGTGAGCCCGCCGAGGATGAAGTCGATGTCGTCCGATGAATCGCCTGGGAATTCAGATCATGGAGATAGCCTTTGGAGTTTTTGA 699 0.5837 MDSNPPSGNLNQLDQPSASPPPPSLQVLASRESSSSSPRPLRSPGGSSLSSSTAAAQHASRRHATFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALALKGPDTHLNFPNLILSYPIPASLSATDIRAAAAAAAEARLVRSAESGGQNVGEGSGSQAEGSSRGEVVVKSEEFIDEDELLNMPSLLDDMARGMQVSPPRMKSMSSDESPGNSDHGDSLWSF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1411 232 MobiDBLite consensus disorder prediction 209 232 - -
Dere06g1411 232 MobiDBLite consensus disorder prediction 1 15 - -
Dere06g1411 232 ProSiteProfiles AP2/ERF domain profile. 65 121 IPR001471 GO:0003700|GO:0006355
Dere06g1411 232 MobiDBLite consensus disorder prediction 158 174 - -
Dere06g1411 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 47 210 - -
Dere06g1411 232 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Dere06g1411 232 FunFam Ethylene-responsive transcription factor 2 64 122 - -
Dere06g1411 232 MobiDBLite consensus disorder prediction 24 59 - -
Dere06g1411 232 MobiDBLite consensus disorder prediction 1 78 - -
Dere06g1411 232 MobiDBLite consensus disorder prediction 190 232 - -
Dere06g1411 232 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Dere06g1411 232 SMART rav1_2 65 127 IPR001471 GO:0003700|GO:0006355
Dere06g1411 232 Pfam AP2 domain 67 113 IPR001471 GO:0003700|GO:0006355
Dere06g1411 232 CDD AP2 66 123 IPR001471 GO:0003700|GO:0006355
Dere06g1411 232 MobiDBLite consensus disorder prediction 154 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1411 Dere-ChrDere06 26918474 26919172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1411 60 232 AP2-EREBP Transcription Factor Family AT5G52020 58.101 2.88e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere06g1411 AP2 2.9e-10 CL0081