Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1410 ATGTTTTCGTTCACTTATTCTTCTGACCCGCATCCGTTTAGGTCGGGATATAATGATTTAGACATGCCAGAGTACACGTCGTCTCCGGCTTCGGATAGTTGCAGTGGCAGCGGAGTTCGATCGGTGGCTCTGTCTGACGAGGAGGTGTTGTTGGCTGCGAGTCACCCGAAGAAGCGCGCCGGGAGGAAGAAGTTCCGGGAGACTCGCCACCCGGTGTATCGGGGCGTTCGGAGGAGGAACTCCGGGAAGTGGGTGTGCGAAGTGCGTGAGCCTAATAAGAAGTCGAGGATTTGGCTCGGGACCTTCCCCACAGCGGAGATGGCAGCACGGGCGCACGACGTGGCAGCGAAAGCACTGCGGGGCCGGTCAGCTTGTCTTAATTTTGCAGACTCGGCATGGCGGTTGCCGGAGCCGGCATCGACGGAGGCGAAGGATATTCAGAAGGCGGCAGCAGAAGCGGCGGAGGCATTCCGTCCAGGGACGGAATTGGAGACTGATGAAGTGAGGCCGGAGAATGCGGAGGCGGCGGCGCACACGGCGGCGGCGGCGGCGGAGCAGAGTATATTCATTATGGATGAAGAAGAGGGAATGTTAGGGATGCCGAAATTGCTGAGGAACATGGCGGACGCTGTGCTGATGTCGCCAACTCATTACTTTGGGGATCAGTACAATGGTGCTGACGTGGAAGTGGATGATGCTGAAGTGTCACTATGGAGTTATTCAATATAA 729 0.5693 MFSFTYSSDPHPFRSGYNDLDMPEYTSSPASDSCSGSGVRSVALSDEEVLLAASHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAKALRGRSACLNFADSAWRLPEPASTEAKDIQKAAAEAAEAFRPGTELETDEVRPENAEAAAHTAAAAAEQSIFIMDEEEGMLGMPKLLRNMADAVLMSPTHYFGDQYNGADVEVDDAEVSLWSYSI 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1410 242 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 27 240 IPR045277 GO:0003700
Dere06g1410 242 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Dere06g1410 242 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Dere06g1410 242 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Dere06g1410 242 SUPERFAMILY DNA-binding domain 72 131 IPR016177 GO:0003677
Dere06g1410 242 SMART rav1_2 72 135 IPR001471 GO:0003700|GO:0006355
Dere06g1410 242 FunFam Ethylene-responsive transcription factor 2 71 130 - -
Dere06g1410 242 ProSiteProfiles AP2/ERF domain profile. 72 129 IPR001471 GO:0003700|GO:0006355
Dere06g1410 242 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700|GO:0006355
Dere06g1410 242 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1410 Dere-ChrDere06 26882025 26882753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1410 51 240 AP2-EREBP Transcription Factor Family AT4G25470 65.625 4.48e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere06g1410 AP2 6.9e-16 CL0081