Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1406 ATGGACGCAGATGGAGGCAATAAGCGTGTATTCCAGCGTCTTGGCGGGCCTCCGTCGGATACCAGGAACCAGAAAGTATGTTATCATTGGTTGGCAGGCAAGTGCAATAGGCATCCGTGCCCCTTTCTTCACAGTGAATCGCCAAACGCCAACGGAATGTCTTCGAAGCGGTCCCATGGGTTTGCCGATGGTTCAGGTTTTTCGGGAGCACGGAGGAGTCCGAATAATTTTAGTGGCGCTTCAACGTGGGGGCGGGTTCATGGTGGTGGTAATAAAATAGTGAGGAAGAATGATAAAGTTTGTAATTATTGGGTTCAGGGGAATTGTAATTATGGAGACAGGTGTAGGTACCTTCACTCTTGGAGTTTAGGTGATGGTTTTTCGTTACTGACACAACTTGAGGGGCATCAGAAGGTTATTAGCGGAATCGCCTTGCCATCTGGCTCAGATAAACTATATACTGGAAGCAAGGATGAGACGGTACGGGTTTGGGATTGCCAGTCTGGAAAGTGTATGGCTGTGGTCTCTCTTGGTGGCGAAGTAGGATGCATGATCAGTGAAGGTCCTTGGATTTTTGTTGGCATGACTAATTTTGTGAAGGCCTGGAACACTCAAAATTCAATGGAGCTAAGTTTGAGTGGCCCGGTTGGACAAGTATATGCATTGGTTGTGGGTAATGATATGCTCTTAGCTGGCACACAGGATGGTTCTATATTGGCATGGAAGTTTAACGTAGTGACCAACTGTTTTGAGCCAGCTGCATCTCTTAAAGGACATTCCCTTGCAGTTGTTTCATTAGTTGTTGGAGCTAATAGGCTCTACTCTGGTTCTATGGACAATACAATAAGAGTCTGGAATCTTGAAACTTTGCAGTGTTTACAGACCCTTACAGGGCACACATCTGTAGTGATGTCTGTTCTTTGTTGGGACCAGTTTCTCTTATCTTGTTCATTGGACAAAACAGTTAAGGTGTGGGTCGCTACGGAAAGTGGAAACCTAGAAGTGACATATACACACAATGAAGAACATGGCATACTTACTCTCTGTGGGATTCATGATTCACAAGGCAAACCCATTTTGATGTGCTCTTGCAATGATAATACTGTCTGCCTCTATGATTTGCCATCATTTGCAGAGAGAGGCAAGATTTTCAGTAAACAAGAGGTTCGAGCAATGCAAACAGGTCCTGGCTGCATATTTTTCACTGGTGATGGAACGGGTGAAGTGAGGGTGTGGAATTGGTTAGCGGAGTCAACTGCTAGTAGCATTCAATAA 1275 0.451 MDADGGNKRVFQRLGGPPSDTRNQKVCYHWLAGKCNRHPCPFLHSESPNANGMSSKRSHGFADGSGFSGARRSPNNFSGASTWGRVHGGGNKIVRKNDKVCNYWVQGNCNYGDRCRYLHSWSLGDGFSLLTQLEGHQKVISGIALPSGSDKLYTGSKDETVRVWDCQSGKCMAVVSLGGEVGCMISEGPWIFVGMTNFVKAWNTQNSMELSLSGPVGQVYALVVGNDMLLAGTQDGSILAWKFNVVTNCFEPAASLKGHSLAVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTGHTSVVMSVLCWDQFLLSCSLDKTVKVWVATESGNLEVTYTHNEEHGILTLCGIHDSQGKPILMCSCNDNTVCLYDLPSFAERGKIFSKQEVRAMQTGPGCIFFTGDGTGEVRVWNWLAESTASSIQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1406 424 FunFam Zinc finger CCCH domain-containing protein 48 213 421 - -
Dere06g1406 424 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Dere06g1406 424 Pfam WD domain, G-beta repeat 253 286 IPR001680 GO:0005515
Dere06g1406 424 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Dere06g1406 424 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Dere06g1406 424 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Dere06g1406 424 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Dere06g1406 424 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Dere06g1406 424 Gene3D - 90 120 - -
Dere06g1406 424 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Dere06g1406 424 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Dere06g1406 424 SMART c3hfinal6 97 121 IPR000571 GO:0046872
Dere06g1406 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Dere06g1406 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
Dere06g1406 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Dere06g1406 424 FunFam Zinc finger CCCH domain-containing protein 48 121 211 - -
Dere06g1406 424 Gene3D - 121 249 IPR015943 GO:0005515
Dere06g1406 424 Gene3D - 7 60 - -
Dere06g1406 424 MobiDBLite consensus disorder prediction 1 21 - -
Dere06g1406 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 295 IPR001680 GO:0005515
Dere06g1406 424 Gene3D - 250 423 IPR015943 GO:0005515
Dere06g1406 424 Pfam Zinc finger domain 101 119 - -
Dere06g1406 424 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Dere06g1406 424 PANTHER - 66 420 IPR044715 -
Dere06g1406 424 MobiDBLite consensus disorder prediction 49 73 - -
Dere06g1406 424 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Dere06g1406 424 SUPERFAMILY WD40 repeat-like 127 416 IPR036322 GO:0005515
Dere06g1406 424 SMART WD40_4 330 373 IPR001680 GO:0005515
Dere06g1406 424 SMART WD40_4 376 413 IPR001680 GO:0005515
Dere06g1406 424 SMART WD40_4 126 165 IPR001680 GO:0005515
Dere06g1406 424 SMART WD40_4 205 242 IPR001680 GO:0005515
Dere06g1406 424 SMART WD40_4 249 286 IPR001680 GO:0005515
Dere06g1406 424 SMART WD40_4 289 326 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1406 Dere-ChrDere06 26825600 26831530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1406 127 424 Acyl Lipid Metabolism Gene Families AT3G18860 23.765 2.12e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere06g1406 WD40 0.00025 CL0186