Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1395 ATGGTGAGGGGGAAGGTTGAAATAAAAAGGATTGAGAATGCTGCTAATCGTCAAGTGACGTTTTCAAAGCGTAGGAACGGGCTTCTAAAGAAAGCCTACGAGCTATCTGTTCTTTGTGACGCCCAAGTAGCTGTGATTATTTTTTCACAAAGAGGCAGGCTCTATGAGTTCTCAAGTTCTTCTGACATCAGAAAGATTTTCGATAGATACTGTAAACACGACAAGGATGATCATCAACCCTACAAGTTTGACGAGGAACAATACAGCCAGCAACTAAAGTTTGAATCTGCAGCCATGGCAAAGAAGATTGAGTGTCTTGAACTTTCTCGAAGGAAACTAATGGGAGAAGGGTTGAGTTCATGTTCATATGATGAACTTCATGAACTGGAGAAGCAGCTGGAGGGAAGTTTGCACAACATCAGGCTCAGAAAGGATTCGCTTCTCAGAGAGCAAATCGAACACCTAGAAGACAAGCGTGGGAAGATATCATGGCAGCAATGGGCTAAACAGAACGAAGCAGCAACCTACAGTCCAAGCAGCAAAAGTTCAGACGTTGAAACTGAATTATATATTGGACTCCCAGAAAAGCGATGCAGATCATAA 603 0.4262 MVRGKVEIKRIENAANRQVTFSKRRNGLLKKAYELSVLCDAQVAVIIFSQRGRLYEFSSSSDIRKIFDRYCKHDKDDHQPYKFDEEQYSQQLKFESAAMAKKIECLELSRRKLMGEGLSSCSYDELHELEKQLEGSLHNIRLRKDSLLREQIEHLEDKRGKISWQQWAKQNEAATYSPSSKSSDVETELYIGLPEKRCRS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1395 200 Pfam K-box region 85 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere06g1395 200 CDD MADS_MEF2_like 3 79 IPR033896 GO:0000977|GO:0045944
Dere06g1395 200 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dere06g1395 200 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere06g1395 200 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere06g1395 200 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere06g1395 200 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Dere06g1395 200 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dere06g1395 200 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677|GO:0046983
Dere06g1395 200 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dere06g1395 200 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Dere06g1395 200 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dere06g1395 200 ProSiteProfiles K-box domain profile. 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere06g1395 200 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1395 Dere-ChrDere06 26687900 26695301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1395 1 158 MADS-box Gene Family AT2G45660 58.861 6.44e-60 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere06g1395 K-box 5.6e-20 No_clan