Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1386 ATGAACAGAGGGAAGAAGCATCTTAATATATTGCCTTCTTCGGACAATATTCATGATGGTGGTGTTAGTGATAGCGAGAAGAAGACGATTCGTAGGGAAACTGAAAGGCAAAGAAGGATGCAAATGACCTCCCTATGTGATTCACTCCGATCTTTGCTCCCCCAAGAACTCATCAAGGGAAAACGTTCAGTGTCTGATTGCATAGGGGAGGCTGCAAATTACATCAAAGATTTGAAGGAGAAAACCCAAGATCTCCAAACTAAGAGAGATAAGCTCAAACATAAGGCTAGTTCAAGCTTGCTTGGTGCTGGAATAACTGAAAATTCAAGCCACTCAGAGATGGTGAAGTGCGTGAGCATTTTGCCTTCTCCAGGATGCTTGGATATCTCGATAGACAGTGGCTTGGAGGAAAGCAGTTTTCCTCTGTCACCCTTGCTGGAAATATTGATGCATGAAGGATGTAATGTTGTGAGCTGTGTTTCCACTCAAGTGAATGGGAGGCTATATCACTCTATTAAGACTGAGGTGGAAAACTTGGAATACCTTGATATAGCTGGGTTGGAACAGAAACTGAATGATGCGATCTTGTGGTCAAGGTATGACTCCGAGTGA 612 0.4314 MNRGKKHLNILPSSDNIHDGGVSDSEKKTIRRETERQRRMQMTSLCDSLRSLLPQELIKGKRSVSDCIGEAANYIKDLKEKTQDLQTKRDKLKHKASSSLLGAGITENSSHSEMVKCVSILPSPGCLDISIDSGLEESSFPLSPLLEILMHEGCNVVSCVSTQVNGRLYHSIKTEVENLEYLDIAGLEQKLNDAILWSRYDSE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1386 203 Coils Coil 75 95 - -
Dere06g1386 203 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 24 192 - -
Dere06g1386 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 78 IPR011598 GO:0046983
Dere06g1386 203 Pfam Helix-loop-helix DNA-binding domain 28 78 IPR011598 GO:0046983
Dere06g1386 203 Gene3D - 21 101 IPR036638 GO:0046983
Dere06g1386 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 97 IPR036638 GO:0046983
Dere06g1386 203 SMART finulus 32 84 IPR011598 GO:0046983
Dere06g1386 203 MobiDBLite consensus disorder prediction 1 39 - -
Dere06g1386 203 CDD bHLH_AtORG2_like 27 93 - -
Dere06g1386 203 MobiDBLite consensus disorder prediction 20 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1386 Dere-ChrDere06 26585463 26586434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1386 27 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 38.462 6.59e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere06g1386 HLH 5.2e-07 No_clan