Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1355 ATGGTGAGCCGGAGGCAGCGACTTGCTGGGAAAAGATACAAAGCGGAGCACCCTCAACTGTTCCCAAAGCCAGAGCCAACACCCCCAAAAGACCCTGACAAGAAGAAGAAGAAGAAGAAACCGAAGAGTTTGCACAAGCGAAAAAAGGGAGAATCGAAAGAACTCGGTGTTACTAATAAACCCTTTAAAAAGAGTTCGAGAAAACACCCACTTAGAGTTCCTGGCATGAAGCCCGGTGAGAGTTGTTTCATCTGCAAAGCTAAAGACCATATTGCCAAGTTCTGTTCCAAAAAGGCTGATTGGGAAAAGAATAAGATATGTTTGCGTTGTCGACAGCGTGGCCATAGAGCCAAGAATTGCCCTCAGGTGCAAGATGGCTCCGACGCCAAGGATGGGAAACTATGCTATAATTGTGGGGAAACTGGACACTCACTTTCAAAATGTCCACAGCCTCTTCAAGATGGGGGGACAAGATTTGCTGAGTGCTTTGTGTGTAATGGACGTGGACACTTGAGCAAAAACTGCCCTCAAAATGCTCATGGCATATATCCCAAGGGCGGTTGTTGTAAAATATGTGGTGGTGTGACACATTTGGCAAAGGATTGTCCTGACAAAGGGAAAAAAGAGTCTGTTACTGTTTATGGGTCTGCAAATGCTGCAACTGGAACTGGAGAAAGGCCAAGAAATCAAGTCACCAAACTTGTGAGCGGAGATGATCTTGAGGATGACTTCTTGGCTGATGAGCTATATAATGTTGACAAGGCCTCAAAATCAAAAAATGTGAATGAAAAACCAAGGAAAAAGAAGGGTCCCACAGTTGTAAACTTCACCTAA 834 0.4472 MVSRRQRLAGKRYKAEHPQLFPKPEPTPPKDPDKKKKKKKPKSLHKRKKGESKELGVTNKPFKKSSRKHPLRVPGMKPGESCFICKAKDHIAKFCSKKADWEKNKICLRCRQRGHRAKNCPQVQDGSDAKDGKLCYNCGETGHSLSKCPQPLQDGGTRFAECFVCNGRGHLSKNCPQNAHGIYPKGGCCKICGGVTHLAKDCPDKGKKESVTVYGSANAATGTGERPRNQVTKLVSGDDLEDDFLADELYNVDKASKSKNVNEKPRKKKGPTVVNFT 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1355 277 MobiDBLite consensus disorder prediction 218 237 - -
Dere06g1355 277 MobiDBLite consensus disorder prediction 33 47 - -
Dere06g1355 277 SUPERFAMILY Retrovirus zinc finger-like domains 126 179 IPR036875 GO:0003676|GO:0008270
Dere06g1355 277 MobiDBLite consensus disorder prediction 255 277 - -
Dere06g1355 277 PANTHER OS04G0555800 PROTEIN 1 276 - -
Dere06g1355 277 FunFam Zinc finger CCHC-type-containing 9 159 212 - -
Dere06g1355 277 Gene3D - 129 181 - -
Dere06g1355 277 MobiDBLite consensus disorder prediction 255 270 - -
Dere06g1355 277 ProSiteProfiles Zinc finger CCHC-type profile. 162 177 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 MobiDBLite consensus disorder prediction 1 73 - -
Dere06g1355 277 ProSiteProfiles Zinc finger CCHC-type profile. 135 150 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 SMART c2hcfinal6 81 97 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 SUPERFAMILY Retrovirus zinc finger-like domains 75 123 IPR036875 GO:0003676|GO:0008270
Dere06g1355 277 ProSiteProfiles Zinc finger CCHC-type profile. 107 122 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 Pfam Zinc knuckle 107 122 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 Pfam Zinc knuckle 134 150 IPR001878 GO:0003676|GO:0008270
Dere06g1355 277 Gene3D - 75 128 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1355 107 210 C2H2 Transcription Factor Family AT5G20220 28.926 4.97e-06 45.4