Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1343 ATGACCGATTCCGAAGAAGAAATTCCCGACCTTCCTCCCAAGTCAGCGCCCAAGGCGGAGGAACCTGGGTCCGTCATGGATTTCGATCTGGACCTGGAGACTTCTTGGCCGTTGGATCAGATATCTTTTGGCTCTAACCCTATGTCTCCTCTTCTTATCCCTGCCACCTTGGAGCAACCTTTTTCTCCTCTCTGGGTTTTCTCCGACCTAGACGATGATAAGCAAGCTAGACTTGCCGCTTCCGCTTTCTCCGACGGCCATCGATTGTTCTCCTGCAATTCAAATTCAGTAGCTGAAAAACCAGTGCAAAATGAGGAGAACCAAAAACTTCATTCGCCCTTTGTGGCTCTGCCACCATTAGAAAATCTTGATGGGTATTGTCTAATCAAAGAAAGGATGACACAAGCACTAAGGTACTTCAAAGAGTTGACTGAACATAATGTTCTGGCTCAGATTTGGGCACCTGTGAGGATTGGGAACCAGTATTTGCTTACAACTTCAGGGCAACCCTTTGTTCTTGATCCACATAGTAATGGACTATATCAGTATAGAACAGTCTCTCTGACGTACATGTTTCCTGTGGATGGGGAGAATGATGTAATCCTGGGACTTCCTGGTCGTGTTTTTCAGCAGAAGTTGCCTGAATGGTCTCCCAATGTTCAATACTATTCTAATAGAGAGTATCCACGTCGAAATCATGCTCAAAATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAGGGCAGTCATGTGTTGGTGTACTGGAATTGATAATGACTTCTCAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTCAATTTGAAGAGTTCAGAAATTTTGGAACATCCATACACTCAGATTTGTAATGAAAGCCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTTACAAATTACCTCTGGCCCAAACATGGGTTCCCTGTAGGCATCGGAGTGTTCTAGCCCACGGTGGTGGCCTGAAGAAGATTTGCTCAAGCTTTGATGGTAGTTGCATGGGGAAAGTTTGCATGTCTACTACTGATGTAGCATTCTATGTCGTAGATGCTCATATATGGGGTTTCCGTGAAGCCTGCGGTGAGCATCACTTACAACAGGGTCAAGGGGTTGCTGGGAAGGCATTTTTGTCTGGCAATATGTGCTTCTGTGGAAACATTACCAAGTTCTGCAAAACTGAGTACCCCTTAGTACATTACGCTCTCATGTTTGGCTTAACCAGCTGTTTTGCAATCTGTTTACAAAGCTCTCATACTGGAAATGATGATTATATATTAGAGTTTTTTCTGCCTCCTGAAATCACTGACTTCAATGAACAAAAGACTCTGTTGGGATCTATATTAGTAACAATGAAACAACATTTCCAAAGTCTTAAGATAGCTGCTGGTGGTGAACTCAAGGACGAAGGTTCAATTGAAATCATTGAAGTAACAAATGAAAGAGTTTACTCAAGGCTTGAGTCTATACCAATTACCCAACCTACTAAATCACCACCTGGACCTGATGCCTCGCCAAATATTGGGGAGATGGTACCACTGGATTCATCAGAGCATCAAATGACATACTTTGATGATATGAACGGGGGAGGAAGTCTTGGTGATGATGCAGGTGGAAACTTTGATCAGCCTTCTTCCTTAGAGACTAAAAACTTAAAGAAACCCTCAGAGAGAAAACGGGGAAAAACTGAGAAATCAATTAGCCTTGAAGTTTTGCAACGATATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGTCTTGGTGTGTGTCCCACTACAATGAAGCGTATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGGAAGATTAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGGGTCATTGAATCTGTTCAAGGTGCTGAAGGAGCCTTTGGTTTGAATTCTCTCAGCGCCAGTCCACTTCCCATGGCTGTTGGTTCGTTTCCTGAGCCTTCAAACAAGTTCAGCCAACATGCCTCATTAAGCACTCAACTATCAGAGCCTCAGATGAAAGAGAATGAGTTGAATGCCTTCAAAGTATCAGAAACAAACAGACTGACGGGGTTGGAACATCAATTACTTGGAGGCAGGGTACAAAGTCCTGAGATAGTGATACATGACAAAAGTGGGTTCTGTCAGGAGTTTGGTAAAGGCGCAAAAGGGTCTGGAGCTGGGAGTGGTTCAAGTGAAGATAGTGCAAACCCTACTTCTGGCGGCTCATGTCACGGTAGTCCCCCAAATGAAAGTTCACCTGCAAAAGATATATTCATTACATCCAACAATGATCAATGTCTTGCAGCGGGGGGATCACCAGAGTTGACCCTGCACCCAATTAGTAAACTGAACAGTCCACCTGCATACACAACAGCCAACTTAGTGGCGACGGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGTAGTTCCAAGGACTTGAGAAACTTGTGTCCTTCAGCAGCAGATGCCAATTTGGAGGATCAGGTACCAGAAGCTTGTGGGGCTAATCCTCCATGTTCTGACCCGTGTCTGAAGCAGTGGACCAATACTCTTGGCAACACAGTGACACCTTTTGCAGCCCGAAGAGAAGTGACAAGTGCGACAATAAAAGCAACTTATAGAGAAGATATCATACGGTTTCGTATCTCCTTGACCTCTGGCATTGTGGAGCTGAAAGAAGAAGTTGCCAAAAGACTGAAACTAGAGGTGGGTACATTTGATATTAAGTACCTGGATGATGATCACGAATGGGTTTTGATAGCCTGTAATGCAGACCTTCAGGAGTGCATGGATATCTCTAGATCATCCGGTAGTAATATAATCAGGCTTTTGGTGCATGATATAGCATCCAATCTTGGAAGCTCCTGTGAGAGCTCAGGGGAGTAA 2970 0.4431 MTDSEEEIPDLPPKSAPKAEEPGSVMDFDLDLETSWPLDQISFGSNPMSPLLIPATLEQPFSPLWVFSDLDDDKQARLAASAFSDGHRLFSCNSNSVAEKPVQNEENQKLHSPFVALPPLENLDGYCLIKERMTQALRYFKELTEHNVLAQIWAPVRIGNQYLLTTSGQPFVLDPHSNGLYQYRTVSLTYMFPVDGENDVILGLPGRVFQQKLPEWSPNVQYYSNREYPRRNHAQNYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILEHPYTQICNESRQNALAEILEILTVVCETYKLPLAQTWVPCRHRSVLAHGGGLKKICSSFDGSCMGKVCMSTTDVAFYVVDAHIWGFREACGEHHLQQGQGVAGKAFLSGNMCFCGNITKFCKTEYPLVHYALMFGLTSCFAICLQSSHTGNDDYILEFFLPPEITDFNEQKTLLGSILVTMKQHFQSLKIAAGGELKDEGSIEIIEVTNERVYSRLESIPITQPTKSPPGPDASPNIGEMVPLDSSEHQMTYFDDMNGGGSLGDDAGGNFDQPSSLETKNLKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSASPLPMAVGSFPEPSNKFSQHASLSTQLSEPQMKENELNAFKVSETNRLTGLEHQLLGGRVQSPEIVIHDKSGFCQEFGKGAKGSGAGSGSSEDSANPTSGGSCHGSPPNESSPAKDIFITSNNDQCLAAGGSPELTLHPISKLNSPPAYTTANLVATELQEPFGGMLIEDAGSSKDLRNLCPSAADANLEDQVPEACGANPPCSDPCLKQWTNTLGNTVTPFAARREVTSATIKATYREDIIRFRISLTSGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACNADLQECMDISRSSGSNIIRLLVHDIASNLGSSCESSGE 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1343 989 MobiDBLite consensus disorder prediction 511 586 - -
Dere06g1343 989 SMART PB1_new 894 976 IPR000270 GO:0005515
Dere06g1343 989 MobiDBLite consensus disorder prediction 751 781 - -
Dere06g1343 989 FunFam RWP-RK domain-containing protein 891 975 - -
Dere06g1343 989 Pfam PB1 domain 896 975 IPR000270 GO:0005515
Dere06g1343 989 PANTHER PROTEIN NLP8 59 988 IPR045012 GO:0003700
Dere06g1343 989 MobiDBLite consensus disorder prediction 742 781 - -
Dere06g1343 989 Gene3D - 892 975 - -
Dere06g1343 989 MobiDBLite consensus disorder prediction 1 24 - -
Dere06g1343 989 ProSiteProfiles RWP-RK domain profile. 575 656 IPR003035 -
Dere06g1343 989 CDD PB1_NLP 896 975 IPR034891 -
Dere06g1343 989 ProSiteProfiles PB1 domain profile. 894 976 IPR000270 GO:0005515
Dere06g1343 989 Pfam RWP-RK domain 588 636 IPR003035 -
Dere06g1343 989 SUPERFAMILY CAD & PB1 domains 895 979 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1343 Dere-ChrDere06 25790125 25794543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1343 263 989 NLP Transcription Factor Family AT4G24020 54.447 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dere06g1343 PB1 9.1e-18 CL0072