Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1317 ATGTCTTCGCCGGGATTCACGGGCGGTGGAGCACCGGACTTCTACGGCGGAGCCGGCCGATCCATGGCGGCAGCCACCATGAACGACCCTACCATCACTAACGGCCTTCGCCCTTCTCATCATCATCCTCTGTACCGAACCCAGCAACAACAACAACAACAACAACTACCAGCGATTTTTCTAGATCCTTACGCGCAGATCGCAAGGCAAAGTCCGAGTCTGATCGGTAAGCGAACTCTCGCCGAATTTCAATCTCACCAGCAGAGTCACCCCAACAATCAGGTTCTTTCAAACCTTCTCTTACGCTCTGTGAAGCCCAGAACCTTTCAGAATAGCTCCCCTATGTCTCCTATGTCACCCATGGATTTCTCCATGTCCCCTGAATTGCCAAACTCTTCCTCGGCTTTTCCGTCACAGCGTTTTGGGATGCCTTTTCTTCAGCAATCACGCCCACAGACGATGAATCTTCCAAACACAGCCTTACCCAAAGCTGGTTTATCATATATGAATACTAATTTGGTTCAGGAAAGTGAGAAGAAGGTGATGGACCATCGGCTTCAGGAGTTGGAGAAACAGCTTTTGGAAGACAACGATGAGGAAGAAGGCGATGGGGTGTCTGAGATTACCAGCAACGCGTTTTCAGAGGCCATCCAGAACCTGATCAGCCCTGGAGTACAGAAGCCTATTTCGTCATCACCCACTTCGTCTACAACCTCAACGACGTCGTCTTCTTCCTCTGTATCTTCCCCTGCTTCCACCTGTTTGAAGCAGTCGTTAATGGAGGCCGCATCTGCTATTTCCGAAGGGAAATCGGAGTCCGCGACGGAGATCCTGACCCGTTTGGCCCAGGTATCAAATCCTAACGGCAATTCAGACCAACGATTAGCGGATTGTATGGTTTCGGCACTGAAATCGCGTGTGAACCCACGCGAAAACCCACCTCCTGTGGTAGAACTGTTTGGCATCGAACACGCCGAGTCGACTCAGTTGCTCTTCGAACATTCCCCGTGCTTCAAGGTTGGGTTCATGGCGGCTAATCTCGCAATACTGGAAGCTGCATTCGAGGACAGAACAGATAACACCGGCAATAACAAGCTTCGCGTGGTTGATTTCGACATCGGCAAGGGCAACCAGTACATCTATCTTCTCCACGCGCTCTCGGCGCGTCAACATGGAAAATCAGTCACGGTGAACATAACGGCGGTTGCAGAGAACAGCGGCGACGAGAGGTTGAGGACGGTGGGCCATATGCTGAGTCAGCAAGCAGAACGACTCGGAGTGGGGTTCGAGTTCAAAGTGGTATCCCAAAAACTCACCGAGTTGACTCGAGAGTCACTGGGCTGCGAGCCCGACGAGACACTCGCGGTGAACTTCGCTTTTAAATTGTACAGAATGCCAGACGAAAGCGTTTCCACGGAGAACCCACGAGACGAGCTTCTCCGGCGCGTGAAGGGTTTGGCCCCGCGCGTGGTGACGCTAGTGGAGCAAGAGATAAACACCAATACGGCGCCGTTTATGTCCCGCGTGGCCGAGTCCTGCTCATATTACGGCGCTCTGTTTGACTCACTCGAGTCAACAATGCCAAGGGACAACCCGGACCGAGTTAAGCTGGGGCAAGGACTGAGTCGAAAGCTGAGCAACTCGGTCGCTTGCGAAGGAAGAGATCGCGTGGAGAGATGTGAGGTGTTTGGAAAGTGGAGGGCGCGTATGAGCATGGCGGGTTTTCAATTCAAGCCTATGAATCAGAGAATCGCCGAGTCAATCAAAGCGCGACTCAACCAGGGGAACCGAGTCAACCCGGGATTCACGGTGAAAGAGGAGAATGGTGGGATTTGCTTTGGTTGGATGGGTCGAACACTCACCGTCGCATCTGCTTGGCGTTAA 1884 0.526 MSSPGFTGGGAPDFYGGAGRSMAAATMNDPTITNGLRPSHHHPLYRTQQQQQQQQLPAIFLDPYAQIARQSPSLIGKRTLAEFQSHQQSHPNNQVLSNLLLRSVKPRTFQNSSPMSPMSPMDFSMSPELPNSSSAFPSQRFGMPFLQQSRPQTMNLPNTALPKAGLSYMNTNLVQESEKKVMDHRLQELEKQLLEDNDEEEGDGVSEITSNAFSEAIQNLISPGVQKPISSSPTSSTTSTTSSSSSVSSPASTCLKQSLMEAASAISEGKSESATEILTRLAQVSNPNGNSDQRLADCMVSALKSRVNPRENPPPVVELFGIEHAESTQLLFEHSPCFKVGFMAANLAILEAAFEDRTDNTGNNKLRVVDFDIGKGNQYIYLLHALSARQHGKSVTVNITAVAENSGDERLRTVGHMLSQQAERLGVGFEFKVVSQKLTELTRESLGCEPDETLAVNFAFKLYRMPDESVSTENPRDELLRRVKGLAPRVVTLVEQEINTNTAPFMSRVAESCSYYGALFDSLESTMPRDNPDRVKLGQGLSRKLSNSVACEGRDRVERCEVFGKWRARMSMAGFQFKPMNQRIAESIKARLNQGNRVNPGFTVKEENGGICFGWMGRTLTVASAWR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1317 627 ProSiteProfiles GRAS family profile. 246 627 IPR005202 -
Dere06g1317 627 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 219 618 IPR005202 -
Dere06g1317 627 MobiDBLite consensus disorder prediction 28 51 - -
Dere06g1317 627 Pfam GRAS domain family 255 627 IPR005202 -
Dere06g1317 627 Coils Coil 179 199 - -
Dere06g1317 627 MobiDBLite consensus disorder prediction 223 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1317 Dere-ChrDere06 25501798 25503681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1317 49 627 GRAS Transcription Factor Family AT5G52510 50.971 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere06g1317 GRAS 1.6e-105 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1317 06 25501798 25503681 Dere06g1317 06 25501798 25503681 ECH