Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1305 ATGACGGATCCTAATGTTTATGTGGATGATAAAAGCGAAAGTAGACTGTATATTGGTAATCTTGATCTAAGAATAACAGAAGCAGCTCTTATAAAAATGTTTTCTCCTTTTGGAAAGATTGTATCTGAGGACTTCTTATGGCACACTCGTGGCCCCAAACGTGGGGAGCCACGTGGTTTTGCTTTTATCCAGTATAGTTCAAAAGAGGAAGCAGAATTGGCCAAGGAGAAAATGCATGGGAGGTTAGCTTGTGGCCGGCCGCTCGTCGTTCGGCTTGCTAGTGAGAAGTACCTGTTAGAAACAGCTGATAACTCTTTGAAAGCCTCTGGAGAAGGGCACAAGATACACCTTACTGGTAGTGGCATGGGACAGACAAGTCGTAGTGCAAAAATAGCTGCAATAAAGAACAAATTGAAATCCTTGGAAGAGGAGGGCTCTAGGCCAAAGAAACAGAAGCAAACTGATGATATATCTTGA 477 0.4277 MTDPNVYVDDKSESRLYIGNLDLRITEAALIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQYSSKEEAELAKEKMHGRLACGRPLVVRLASEKYLLETADNSLKASGEGHKIHLTGSGMGQTSRSAKIAAIKNKLKSLEEEGSRPKKQKQTDDIS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1305 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 95 IPR000504 GO:0003723
Dere06g1305 158 SMART rrm1_1 15 91 IPR000504 GO:0003723
Dere06g1305 158 Gene3D - 11 102 IPR012677 -
Dere06g1305 158 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 52 152 - -
Dere06g1305 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 88 IPR000504 GO:0003723
Dere06g1305 158 MobiDBLite consensus disorder prediction 136 158 - -
Dere06g1305 158 CDD RRM_RBM18 15 94 IPR039157 -
Dere06g1305 158 SUPERFAMILY RNA-binding domain, RBD 5 98 IPR035979 GO:0003676
Dere06g1305 158 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1305 Dere-ChrDere06 25419292 25420602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1305 14 96 Eukaryotic Initiation Factors Gene Family AT3G16380 37.349 4.56e-12 60.8