Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1293 ATGGTCTCCAAAAACCCAAACCCCCCAGAGGGCTTCTACTTGGATCCCACTGGCATGGCGCTTCCTGGCCTCGGTCCCTTCGCCTCGGTCACCGCCTCCGCCACGACCACGACGGCATCCACCTCAAATTCGTCGGAGGACCCTGCGAAGAAGATCCGTAAACCATACACTATTACCAAGTCCAGGGAGAGCTGGACCGAACCCGAGCATGACAAATTCCTCGAAGCCCTCCAACTCTTTGACCGTGACTGGAAAAAGATTGAAGCATTTATTGGGTCAAAGACAGTTATACAGATACGTAGCCATGCACAAAAATACTTTCTAAAAGTTCAGAAGAGTGGAACAAATGAACATCTACCTCCACCTAGGCCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCCAAAAATGCTCCAGTACACTCTCAAGTGTCAGGATCCTTCCAATCTTCATCTCCTTTGCTTGAACCTGGATATACACTGAAGCCTGATTCCTCTGCAATGATCAAAACTCCAGCTGCTAAAACTGCAGTGTCTTCTCGGTCAAACAACACCTTGCAGACAACCAATTTATTGCATGGGCCAAGAGTTAATAATTGTTGCAGTAGCAGTGAAAGCACTCCTAGAGCACGGCCTACTGGTGCATCTGCTGGTCAAGGGAACAATACCCATCCATTGAGAGTTCTTCCAGATTTTGTTCAGGTATACAATTTCATTGGCAGTGTATTTGACCCAAATACCACTGGTCATTTGCAGAAACTTAAAAAGATGGACCCTATAGATGTTGAGACGGTGCTGCTGTTGATGAGAAACCTGTCTATCAATTTAAGGAGCCCAGATTTTGAGGATCATAGAAGGTTGCTTTCTTCCTATGAGGTGGAACCAGAGACAAGTTAG 903 0.4618 MVSKNPNPPEGFYLDPTGMALPGLGPFASVTASATTTTASTSNSSEDPAKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKSGTNEHLPPPRPKRKAAHPYPQKASKNAPVHSQVSGSFQSSSPLLEPGYTLKPDSSAMIKTPAAKTAVSSRSNNTLQTTNLLHGPRVNNCCSSSESTPRARPTGASAGQGNNTHPLRVLPDFVQVYNFIGSVFDPNTTGHLQKLKKMDPIDVETVLLLMRNLSINLRSPDFEDHRRLLSSYEVEPETS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1293 300 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Dere06g1293 300 MobiDBLite consensus disorder prediction 33 54 - -
Dere06g1293 300 MobiDBLite consensus disorder prediction 174 193 - -
Dere06g1293 300 Gene3D - 65 112 - -
Dere06g1293 300 MobiDBLite consensus disorder prediction 198 224 - -
Dere06g1293 300 PANTHER SWI/SNF COMPLEX-RELATED 31 279 - -
Dere06g1293 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Dere06g1293 300 CDD SANT 64 107 IPR001005 -
Dere06g1293 300 SMART sant 61 109 IPR001005 -
Dere06g1293 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
Dere06g1293 300 ProSiteProfiles SANT domain profile. 60 111 IPR017884 -
Dere06g1293 300 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Dere06g1293 300 MobiDBLite consensus disorder prediction 138 158 - -
Dere06g1293 300 FunFam protein REVEILLE 6 isoform X1 64 112 - -
Dere06g1293 300 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Dere06g1293 300 MobiDBLite consensus disorder prediction 111 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1293 Dere-ChrDere06 25273308 25280185 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere06g1293 Myb_DNA-binding 7e-10 CL0123