Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1277 ATGGCTTCCGATCTCGAAGTCAAAGCTAGAGAGGCTTTCATCGATGACCACTACGAGCTCGCCGTAGACCTCCTCACTCAAGCTATCGCTCTCAACCCTAACAGCGCCGAGGTCTATGCCGACCGGTCTCAGGCTAACATCAAACTCGGCAACTACACCGAAGCCATTGATGATGCAAACAAGGCAATTGAGTTGAATCCTGAACTATCCAAAGCATATTTGCGCAAAGGTACTGCATGCATGAGGCTCGAGGAATATCAGACAGCTAAAGCAGCTTTGTTGAAGGGTGCTTCTTTGGCTATTGGAAATTCAAGATTCACTACCTTGATCAAAGAGTGTGATGAGCTTATTGCAGAAGAAACTAGTACCATAAGTATATCAGAAAAGAGCAAAATTCGTGATAAGACCACCACCTCTGATGCACCTTCAAATTATGTTAAGCCAGAGAATGACCTTTCGAAACAGGTGGTAGAAACAGTTGCTAAACCTAAATACAGGCATGAATTCTACCAGAAGCCTGATGAAGTGGTTGTGACCATATTTGCCAAGGGAATCCCACGGGATAAAGTTACTGTTGACTTTGGTGAACAAATACTAAGTGTTCGTATTAATGTTCCTGGGGAAGATGGATATACTTTTCAACATCGCTTATTTGGAAAGATAATACCTGCAAGATCCAGATATGAGGTTTTGTCTACCAAAATTGAAATTCGCCTTGCAAAAGGAGAACCTATACATTGGACATCTCTAGAATTCACGGGGGAAATTAGAGTTCAGCAAAAGCCTAATGTTTCCTCCGGACAAAGACCTACTTACCCATCCTCAAAACCAACGAGAGTAGATTGGGATAAGCTTGAAGCTCAAGTTAAGAAAGAGGAGAAAGAAGAAAAGCTTGACGGGGATGCAGCATTAAACAAATTTTTCCGTGAAATATATCAAGATGCAGACGAGGACACAAGAAGAGCAATGAGAAAGTCATTTGTGGAGTCTAATGGAACAGTACTGTCTACAAACTGGAAAGAAGTCGGATCAAAGAAGGTAGAGGGAAGTCCTCCCGATGGCATGGAGTTGAAAAAATGGGAATATTAA 1089 0.4215 MASDLEVKAREAFIDDHYELAVDLLTQAIALNPNSAEVYADRSQANIKLGNYTEAIDDANKAIELNPELSKAYLRKGTACMRLEEYQTAKAALLKGASLAIGNSRFTTLIKECDELIAEETSTISISEKSKIRDKTTTSDAPSNYVKPENDLSKQVVETVAKPKYRHEFYQKPDEVVVTIFAKGIPRDKVTVDFGEQILSVRINVPGEDGYTFQHRLFGKIIPARSRYEVLSTKIEIRLAKGEPIHWTSLEFTGEIRVQQKPNVSSGQRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1277 362 SUPERFAMILY HSP20-like chaperones 159 257 IPR008978 -
Dere06g1277 362 SMART tpr_5 2 35 IPR019734 GO:0005515
Dere06g1277 362 SMART tpr_5 70 103 IPR019734 GO:0005515
Dere06g1277 362 SMART tpr_5 36 69 IPR019734 GO:0005515
Dere06g1277 362 MobiDBLite consensus disorder prediction 260 275 - -
Dere06g1277 362 SUPERFAMILY TPR-like 6 105 IPR011990 GO:0005515
Dere06g1277 362 Pfam Tetratricopeptide repeat 71 99 IPR019734 GO:0005515
Dere06g1277 362 ProSiteProfiles TPR repeat region circular profile. 36 68 - -
Dere06g1277 362 ProSiteProfiles CS domain profile. 162 251 IPR007052 -
Dere06g1277 362 FunFam Protein SGT1 homolog A 160 263 - -
Dere06g1277 362 CDD p23_CS_SGT1_like 168 251 - -
Dere06g1277 362 Pfam SGS domain 281 360 IPR007699 -
Dere06g1277 362 PANTHER PROTEIN SGT1 HOMOLOG 1 360 IPR044563 GO:0051087
Dere06g1277 362 ProSiteProfiles SGS domain profile. 271 362 IPR007699 -
Dere06g1277 362 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Dere06g1277 362 MobiDBLite consensus disorder prediction 260 279 - -
Dere06g1277 362 Pfam CS domain 166 241 IPR007052 -
Dere06g1277 362 Pfam Tetratricopeptide repeat 36 68 IPR013105 -
Dere06g1277 362 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515
Dere06g1277 362 Gene3D - 163 253 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1277 Dere-ChrDere06 25002539 25008099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1277 1 86 U-box Gene Family AT3G07370 30.233 2.59e-06 46.6