Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1272 ATGGAACAGAAGCACATTTTGTTCTCGGCATTGAGTGTTGGGGTTGGGTTGGGTGTGGGAATCGGGTTGAGTTCAGGTCAGACTGTGCAGAAATGGGTTGGGGGGAATCGCGAGTCTGGAGAGCTTTGTGGGGAGATGATTGAGCAGGAGCTCATTAGGCAGGTGGTTGATGGGAAGAACAGCAATGTCACATTCGAAGAGTTTCCTTATTACTTAAGTGAAAGAACTCGAGTGTTGTTGACAAGTGCTGCATATGTTCATTTGAAACAATTTCACATTTCCAAGCACACCCGGAATCTTTTACCAGCGAGCCAAGCTATACTGCTTTCTGGACCTGCAGAACTTTACCAGCAAATGCTTGCCAGAGCATTAGCACATTACTTTGAATCAAAGTTGCTTTTGCTAGATATTACTGACTTCTCTAGGAAGATGCAGAGCAGATATGGATGTGCAAGAAAAGAACCAGTCCATTTCCGAGTTGACTTTGGAGGGAATGTCCAGTTTGTTTGGTTCCTTTTCATCCAGCGACACAAGAGGAATGCCTCTGTTGCTGCTGATATGAGTAGTACTTCTTCACATTGTGTACCAACAACTTCAGCTCCCCAGAAGCGCACAAGTAGCATATGCTTGGATGAAAAATTATTTATGCAGTCACTTCACAAGGTCTTGGTTTCTATCTCAGAAACCAGTCCAATCATCCTATATATCAGGAACGCTGGGAAGCTCTTTCTCCAATCATTAAGACTATACAATTTGTTCCAAAGAATGTTAAAGAAAATTCCAGGGTCAGTGCTGATACTTGGTTCACAGATATTAGATTCCGAAGATGGATGCAGAAAAGTTGATGAGAGGCTCACTATATTATTCCCTTACACCGTTGAGATCAAACCGCCTGAAGACGAAACTAATCTTGGCAGTCGGAAAGCCCAGCTGGAAGAGGACATGAAAGTATTTCAGTTTCAAGATGACAGAAACCACATCGCTGAAGTACTTGCCTCAAATGACATTGAATGTGATGACTTGAGCTCAATCTGTCTTGCAGACACAACGCTCTTGAGTCAATATATTGAAGAGGTTGTGTTATCTGCAATATCTTACCATTTGATGAATACAAAACATCCTGAATACCGAAATGGCAAGTTAATTATATCATCCAATAGTTTGTCCCACGGATTGAGTCTCTTCCAGGAAGGCAAAACTAGTGAGAATGATAATCTGAAGCTGGAGAATAATGGATCTAACAAGGACACTACTGGAGAAGGGAGTACTGGTGCGAAGAATGACGTACGTTCTGTCGTCCAAGCACCCGAAAAGAAAAGTGAGACTGAACAATCTACCCCTGTAACGAAAAAGGATGGCGAGAATTCTGCTCCTGTGAAAGCTGAAGTTCCTGACAATGAGTTTGAGAAGCGAATAAGACCCGAGGTTATCCCTGCAAACGAGATAGGGGTTACGTTTGCAGACATTGGTGCACTAGATGAAATTAAGGAATCACTTCAAGAGATGGTTATGCTTCCCCTTCGCAGACCTGACCTCTTCAAAGGTGGTCTTCTTAAGCCATGTAGAGGCATATTGCTTTTCGGGCCTCCTGGTACTGGAAAAACTATGATGGCAAAGGCAATAGCAAATGAAGCTGGTGCAAGCTTCATCAATGTCTCGATGTCCACAATCACTTCAAAATGGTTTGGGGAAGATGAGAAGAATGTCCGTGCTCTGTTCACGCTTGCAGCGAAGGTTGCCCCTACTATAATCTTTGTTGATGAAGTTGACAGTATGCTTGGGCAGAGAACAAGAGTTGGAGAGCACGAGGCCATGAGGAAGATCAAAAATGAGTTCATGACCCATTGGGATGGGCTATTGACAAAACCTGGCGAGCAGATTCTTGTTCTTGCTGCAACCAACAGGCCGTTTGACCTTGATGAAGCAATCATAAGACGGTTTGAGCGCAGAATCATGGTTGGTCTTCCATCTGTTGAGAACAGGGAGCAGATATTGAAAACCCTCCTATCTAAGGAAAAACATGAAAATATAGACTTCAAAGAGCTTGCGGTCATGACAGAAGGATATAGTGGGAGCGATCTTAAGAATTTATGCATGACAGCAGCATATCGACCTGTAAGGGAGCTCATGCAGCAGGAAGTATTGAAGGAAAAGGAAAAGAAGAAAAGAGAGGCAGAAGCCAAAAGCTCAGAAGATGCTTCAGATACTAAAGAAGATGAAAACGACCGAGTGATTACCCTGAGGCCTTTGAACATGGAAGACCTTAAACATGCTAAGACTCAGGTTGCTGCAAGTTTTGCTGCTGAAGGATCAATAATGAGTGAGCTGAAGCAGTGGAATGATTTGTATGGAGAGGGAGGTTCAAGGAAGAAGGAGCAGCTTTCTTACTTCCTCTAG 2397 0.4335 MEQKHILFSALSVGVGLGVGIGLSSGQTVQKWVGGNRESGELCGEMIEQELIRQVVDGKNSNVTFEEFPYYLSERTRVLLTSAAYVHLKQFHISKHTRNLLPASQAILLSGPAELYQQMLARALAHYFESKLLLLDITDFSRKMQSRYGCARKEPVHFRVDFGGNVQFVWFLFIQRHKRNASVAADMSSTSSHCVPTTSAPQKRTSSICLDEKLFMQSLHKVLVSISETSPIILYIRNAGKLFLQSLRLYNLFQRMLKKIPGSVLILGSQILDSEDGCRKVDERLTILFPYTVEIKPPEDETNLGSRKAQLEEDMKVFQFQDDRNHIAEVLASNDIECDDLSSICLADTTLLSQYIEEVVLSAISYHLMNTKHPEYRNGKLIISSNSLSHGLSLFQEGKTSENDNLKLENNGSNKDTTGEGSTGAKNDVRSVVQAPEKKSETEQSTPVTKKDGENSAPVKAEVPDNEFEKRIRPEVIPANEIGVTFADIGALDEIKESLQEMVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREQILKTLLSKEKHENIDFKELAVMTEGYSGSDLKNLCMTAAYRPVRELMQQEVLKEKEKKKREAEAKSSEDASDTKEDENDRVITLRPLNMEDLKHAKTQVAASFAAEGSIMSELKQWNDLYGEGGSRKKEQLSYFL 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1272 798 Pfam AAA+ lid domain 676 714 IPR041569 -
Dere06g1272 798 MobiDBLite consensus disorder prediction 400 429 - -
Dere06g1272 798 MobiDBLite consensus disorder prediction 400 461 - -
Dere06g1272 798 Gene3D - 656 726 - -
Dere06g1272 798 Gene3D - 483 655 IPR027417 -
Dere06g1272 798 MobiDBLite consensus disorder prediction 432 448 - -
Dere06g1272 798 Pfam ATPase family associated with various cellular activities (AAA) 524 654 IPR003959 GO:0005524|GO:0016887
Dere06g1272 798 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 47 797 - -
Dere06g1272 798 Coils Coil 711 731 - -
Dere06g1272 798 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 483 658 - -
Dere06g1272 798 ProSitePatterns AAA-protein family signature. 627 646 IPR003960 GO:0005524|GO:0016887
Dere06g1272 798 SMART AAA_5 520 657 IPR003593 GO:0016887
Dere06g1272 798 MobiDBLite consensus disorder prediction 717 744 - -
Dere06g1272 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 715 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1272 Dere-ChrDere06 24957804 24964421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1272 450 731 Calmodulin-binding Proteins AT3G56690 36.770 3.00e-44 170