Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1259 ATGTTTCATTTTCTGTCTCATCCGTTGGTTCTAATTTGGTGCCCTAAGTCTGATCCCATGAGGAAGAAGCTTGATACCTATTTTCCTGCTGTGCTGATAAAGAAGATAATGCAAGTAGATGAAGACGTTGGAAAAATAGCACTAGCAGTGCCTGTTTTAGTTTCCAAAGCTCTTGAACTATTTTTGCAAGATCTTTGTGACCATACTTATGATATAACTCTTCGTAGAAGAGCAAAGACCATGAGTGCATTGCACTTAAAGCATTGTGTACAAAGCTATAATGTCTTTGATTTCCTGAGGGATATCATGAGCAGAGTGCCTGACTATGGTCATGGGCATGGGCATGGGCATACTGAATCTGGTGCTGATGATCGAGCTGTTTCAAAGAGAAGGAAAGCAATAGGTGATAATTGCAATGACAGTTATGAGGAGTCTAAGAGGAGCAAGATGCATGAGTTGAACCACACTGGCAGTACTGGTAGGGGAAGAGGCCGCGGTCGTGGTGCTCGAGCTGTTGAAAGACTGACTCATTATCAGGAGCTTGCACAGCTTGGGAGACGATTAAAAGAGAGAGAGAAGAAGAAGAAGAAGGAAGGAGAGGAAGAAGCATCAAAGTTGTTGCCGGCTAGGTTGAGGTATGGGAAGTCTGGGCCGTTGTCGAGGTCGAAGAAGGGTGATGGGTCGAGGAGGATTGACGTAGACAAGCTCAAGAGGCTGAGCATGGACAACAGAGCCACGGCGTGGAGCGTGAAGAAGCTGGTGAACTACGTGATGTTGTCCAGGCTGTTGACGATCTCGAGGACGGTGGATGATTTGCAAATGCCGAGTCGGAGATTACCAGCGAGTGGGAGGCTAGGACTTGTGCACAGAGGACTTTCAAGAATATGGCAAAGGAGGGAGCCAAATACATCGAAGAAGAAGATTTACTCAGGTTCTTGA 939 0.4611 MFHFLSHPLVLIWCPKSDPMRKKLDTYFPAVLIKKIMQVDEDVGKIALAVPVLVSKALELFLQDLCDHTYDITLRRRAKTMSALHLKHCVQSYNVFDFLRDIMSRVPDYGHGHGHGHTESGADDRAVSKRRKAIGDNCNDSYEESKRSKMHELNHTGSTGRGRGRGRGARAVERLTHYQELAQLGRRLKEREKKKKKEGEEEASKLLPARLRYGKSGPLSRSKKGDGSRRIDVDKLKRLSMDNRATAWSVKKLVNYVMLSRLLTISRTVDDLQMPSRRLPASGRLGLVHRGLSRIWQRREPNTSKKKIYSGS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1259 312 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 90 IPR003958 -
Dere06g1259 312 MobiDBLite consensus disorder prediction 135 158 - -
Dere06g1259 312 MobiDBLite consensus disorder prediction 135 169 - -
Dere06g1259 312 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 25 139 - -
Dere06g1259 312 MobiDBLite consensus disorder prediction 182 229 - -
Dere06g1259 312 SUPERFAMILY Histone-fold 37 106 IPR009072 GO:0046982
Dere06g1259 312 MobiDBLite consensus disorder prediction 183 208 - -
Dere06g1259 312 FunFam dr1-associated corepressor homolog 20 105 - -
Dere06g1259 312 Gene3D Histone, subunit A 16 105 IPR009072 GO:0046982
Dere06g1259 312 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1259 Dere-ChrDere06 24580278 24581296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1259 20 153 CCAAT-HAP5 Transcription Factor Family AT3G12480 72.388 2.58e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere06g1259 CBFD_NFYB_HMF 5.3e-15 CL0012