Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1257 ATGGTAGTGGAGGGAAGAGATCTTGCTAACTACGGGAATGCCGACCGTGAATTAGAGCAGGCACTGATTGCTTTGAAAAAGGGTGCTCAATTGCTTAAATATGGTCGTAAAGGAAAACCCAAGTTTTGTCCATTTAGGCTTTCCCATGATGAATCATCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGATTGAAGCTATCTTCTGTCTTGAGAATTATTCCCGGACAAAGAACAGCTGTTTTCCAGCGGTATCTGCGTCCTGAGAAGGACTATTTGTCTTTTTCTCTTATTTATAACAACGGAAAGCGGTCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCATTGATATCTTCTGGCCAAGGTGGGCGGTCCAAAATTGATGGATGGAGTGATGGGGGCCTCTATCTTGATGATAACAGAGACTTGACATCAAATAGTCCTAGTGAAAGTTCAGTTAGTACTTCACAAGATATTAACTCTCCTGACACTTCTGTGAGTTTTATTCCTAATACTTCTCCAAAGTCTTTTCGACCGGAGAATTCTGTGAATTCTGAAAGATCACATGCACCATCAGACCCAACAAATATGCAAGTGAAAGGATCTGCTTCAGATGCTTTTCGGGTTAGTGTTTCGAGTGCCCCCAGCACATCAAGTCACGGGTCTGTGCCAGATGATTGTGATGCTCTGGGGGATGTATACATATGGGGGGAGGTTATCTCTGAGAATGTTGTGAGAGTTGGCACAGATAAAAGTGTCAATCATTTCAGCCCAAGGGCAGATGTGCTTCTCCCAAGGCCACTGGAATCAAATGTAGTTTTAGATGTACATCATATAGCGTGTGGTGTTAAACATGCTGCACTAGTCACAAGGCAAGGTGAAGTATTTACATGGGGTGAAGAATCTGGAGGACACCTAGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCATTTAGTGGAAGCTTTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTTCATACCTGTGCTGTTACAGTGGCTGGGGAACTATATACGTGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTGATGTTAGTCACTGGATACCGAAAAGGATTTCAGGTCTACTAGAGGGACTTCAAGTTGCTTTGGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAACTCTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAGATAGGGAGAGTGTATCATATCCTAGAGAAGTGCAAACCTTGTCAGGGTTAAGAACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTGGTCGAGGTTATTGTGACACAGTCCAGTGCAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGACGGAGATAAAAATCGCCTTGGACATGGAGACAAGGAGGCCCGACTTGAACCAACATGTGTGCCTCTGCTTATTGATTACAATTTTTCTAAAATTGCCTGTGGACATAGTTTGACAGTTGGCCTGACAACATCAGGACGTGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGGAATCCACAGTCTGATGGAAAGCTGCCCTGCTTGGTAGAAGACAAGCTTTCTGAAGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCAGTTTTAACGTCAAGAAATGAAGTTTACACATGGGGGAAGGGCGCTAATGGGAGGTTGGGTCATGGAGACGTTGAAGATCGAAAAGCACCAACATTGGTTGAAGCTTTGAAAGATAGACATGTTAAAGATATTGCATGTGGTTCAAACTTCTCTGCTGCCATATGCCTTCATAAATGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGTTTCACAAGAAAGAGGCATAATTGTTATAACTGTGGACTTGTGCATTGCCACTCATGCAGTTCAAGGAAAGCATTAAGAGCAGCTTTGGCTCCTAATCCTGGCAAGCCATACCGTGTTTGTGATTCTTGTTTTGCAAAATTGAACAAGGTGGCAGAAGCTGGCATTAATAATAGGAGGAATGCTATGCCTCGTCTGTCAGGTGAAAACAAGGATAGGTTAGAGAAGTCTGAGATAAGGTTGGCCAAGTCTCCAGTTCCTTCTAATGTGGATTTGATAAAGCAGCTTGATAGTAAGGCAGCGAAACAAGGGAAGAAGGCCGATACATTCTCCCTGGTTCGCACCTCGCAAGCCCCTTCATTGCTGCAGCTGAAAGATGTTGTATTGTCTACTTCTGTTGATGTAAGACGTACAGTTCCAAGACCAGTTCTTACATCATCTGGAGTAAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGCCCACCTCGTTCAGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCAAAAAGTATAGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCTGAAATTACGTGCTCAGGTTGAGAGCCTGAGACAAAGATGTGAATTGCAAGAATTAGAGCTTCAAAGGGCAGAAAAGAAAACTCAGGAAGCTATGGCAGTGGCTGCTGAGGAATCTGCTAAATCTCGAGCTGCAAAAGAAGTTATAAAGTCACTTACTGCACAGCTCAAAGATATAGCTGAAAGACTACCTCCTGGAGCTTATGACACTGATAATATCAGGCCAGCTTATCTGCCAAATGGTTTGGAGCCAAACAGCATCCACAATCCTGACTCAAATGGGGAGTGCCATACTAGAGCAGAGTCAATCAGTGGCTCTAGCTTGGCCTCCATAGCGCTTGAATCTTCTCTCTGCAATAGAACTGAGGTCACAGGAACCTATGGAACCAATCTTTACCAGCATAGCCGGGGCCTTGCACCTTCCAATGGGACAAATGAATATGCAGATGTTAAACTTCCCAATGGTGGTGGTGTGATTCAGGCAACCAGCAATAGCATGTTAGATACTGCAGATGGCAGGGATTCCAGGCCTCTCCAAGATGGCGACAGTGGTTCAAGATCAAAGAATGCTGTACTGGCTGCGAATGGTAATCAAATTGAAGCAGAATGGATTGAACAGTATGAACCTGGAGTATATATAACACTCATGGCCTTGCATGATGGAACGAGAGATCTAAAACGAGTGCGTTTCAGCCGACGAAGATTTGGGGAGCACCAAGCAGAGACTTGGTGGTCTGAGAATCGTGAGAAGGTATATGAAAGGTACAATGTTCGTAGTAGCACGGACAAGTCTGCTAGCCAAGCAGCTCGTAGGGCAGAGGGTGCAGTTTCACCTGTCTCATAA 3372 0.4425 MVVEGRDLANYGNADRELEQALIALKKGAQLLKYGRKGKPKFCPFRLSHDESSLIWISSSGERRLKLSSVLRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDNRDLTSNSPSESSVSTSQDINSPDTSVSFIPNTSPKSFRPENSVNSERSHAPSDPTNMQVKGSASDAFRVSVSSAPSTSSHGSVPDDCDALGDVYIWGEVISENVVRVGTDKSVNHFSPRADVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGHLGHGVGKNVVQPHLVEALASTTVDFVACGEFHTCAVTVAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGLLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRESVSYPREVQTLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPLLIDYNFSKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKLSEESVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDVEDRKAPTLVEALKDRHVKDIACGSNFSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFAKLNKVAEAGINNRRNAMPRLSGENKDRLEKSEIRLAKSPVPSNVDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLSTSVDVRRTVPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVESLRQRCELQELELQRAEKKTQEAMAVAAEESAKSRAAKEVIKSLTAQLKDIAERLPPGAYDTDNIRPAYLPNGLEPNSIHNPDSNGECHTRAESISGSSLASIALESSLCNRTEVTGTYGTNLYQHSRGLAPSNGTNEYADVKLPNGGGVIQATSNSMLDTADGRDSRPLQDGDSGSRSKNAVLAANGNQIEAEWIEQYEPGVYITLMALHDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTDKSASQAARRAEGAVSPVS 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1257 1123 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 289 299 IPR000408 -
Dere06g1257 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 241 302 IPR000408 -
Dere06g1257 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 303 354 IPR000408 -
Dere06g1257 1123 Pfam Transcription factor BRX N-terminal domain 880 914 IPR027988 -
Dere06g1257 1123 Pfam Pleckstrin homology domain 19 127 IPR001849 -
Dere06g1257 1123 FunFam PH, RCC1 and FYVE domains-containing protein 1 212 462 - -
Dere06g1257 1123 FunFam PH, RCC1 and FYVE domains-containing protein 1 463 634 - -
Dere06g1257 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 472 519 IPR000408 -
Dere06g1257 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 355 406 IPR000408 -
Dere06g1257 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 410 458 IPR000408 -
Dere06g1257 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 524 573 IPR000408 -
Dere06g1257 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 303 351 IPR000408 -
Dere06g1257 1123 Pfam Regulator of chromosome condensation (RCC1) repeat 578 625 IPR000408 -
Dere06g1257 1123 MobiDBLite consensus disorder prediction 789 807 - -
Dere06g1257 1123 CDD PH_PLC_plant-like 16 128 - -
Dere06g1257 1123 Gene3D - 191 465 IPR009091 -
Dere06g1257 1123 Pfam Transcription factor regulating root and shoot growth via Pin3 1043 1098 IPR013591 -
Dere06g1257 1123 Pfam FYVE zinc finger 629 695 IPR000306 GO:0046872
Dere06g1257 1123 FunFam Putative E3 ubiquitin-protein ligase HERC1 635 703 - -
Dere06g1257 1123 SUPERFAMILY RCC1/BLIP-II 240 630 IPR009091 -
Dere06g1257 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 701 IPR013083 -
Dere06g1257 1123 SUPERFAMILY FYVE/PHD zinc finger 629 699 IPR011011 -
Dere06g1257 1123 CDD FYVE_like_SF 638 691 - -
Dere06g1257 1123 Coils Coil 829 905 - -
Dere06g1257 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 473 524 IPR000408 -
Dere06g1257 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 410 461 IPR000408 -
Dere06g1257 1123 SMART fyve_4 627 696 IPR000306 GO:0046872
Dere06g1257 1123 Gene3D - 466 641 IPR009091 -
Dere06g1257 1123 PRINTS Chromosome condensation regulator RCC1 signature 305 321 IPR000408 -
Dere06g1257 1123 PRINTS Chromosome condensation regulator RCC1 signature 355 371 IPR000408 -
Dere06g1257 1123 PRINTS Chromosome condensation regulator RCC1 signature 412 426 IPR000408 -
Dere06g1257 1123 PRINTS Chromosome condensation regulator RCC1 signature 514 532 IPR000408 -
Dere06g1257 1123 PRINTS Chromosome condensation regulator RCC1 signature 572 593 IPR000408 -
Dere06g1257 1123 PRINTS Chromosome condensation regulator RCC1 signature 396 412 IPR000408 -
Dere06g1257 1123 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 633 695 IPR017455 -
Dere06g1257 1123 MobiDBLite consensus disorder prediction 789 820 - -
Dere06g1257 1123 FunFam Putative E3 ubiquitin-protein ligase HERC1 16 136 - -
Dere06g1257 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 355 409 IPR000408 -
Dere06g1257 1123 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 396 406 IPR000408 -
Dere06g1257 1123 SUPERFAMILY PH domain-like 18 127 - -
Dere06g1257 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 525 576 IPR000408 -
Dere06g1257 1123 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 62 900 - -
Dere06g1257 1123 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 577 628 IPR000408 -
Dere06g1257 1123 MobiDBLite consensus disorder prediction 151 233 - -
Dere06g1257 1123 ProSiteProfiles BRX domain profile. 1044 1099 IPR013591 -
Dere06g1257 1123 MobiDBLite consensus disorder prediction 1009 1031 - -
Dere06g1257 1123 MobiDBLite consensus disorder prediction 1100 1123 - -
Dere06g1257 1123 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 448 458 IPR000408 -
Dere06g1257 1123 MobiDBLite consensus disorder prediction 151 234 - -
Dere06g1257 1123 Gene3D - 16 133 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1257 Dere-ChrDere06 24549618 24557691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1257 1028 1113 Major Intrinsic Protein MIP AT1G31880 43.023 6.94e-14 72.8