Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1249 ATGCAATTGGGAGACCCAAGTGTGTTGGAGACCTCCGCCGACGGGACCATGATGGCAGCCGTGACGGCGACTGCACCACCAGAAGAAGCTGCTGCCGCCTCCGCCGCCGCGAACGGTGGTACAGAGATTGAAATGATGAATCATGTAGTTAATATGGATGCAGCAAATTCAGGTGATGATATTGAGAAGAGAAGTGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAAATCGGTGGCCACGCCAAGAAACTTTTGCTCTCTTGAAGATAAGGTCAGATATGGACGCTGCGTTTCGGGATTCAAGTCTTAAAGGTCCTCTTTGGGAACAAGTTTCAAGGAAAATGGCAGAACTTGGATATGACCGAAGCGCAAAGAAGTGCAAGGAGAAGTTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAGAGCAGAAGTGGAAAACAAGAAGGCAAAGCCTACAAATTCTTCGATCAATTACAAGCCCTTGAAAATCAATTCACCGTTTCTCACATTCCAAGACAACCACCACCTCCACCACCACAACCCCAGCAACAACCTTCTTCCCAAATGCCAACCATCTCTTATGTCACTGTGCCATCTACAATAAACCCTACCCTCATTTCTCCGTCGGCGCCGCCGCCACCCCCACCGGCCAATATTGCCACCACCATCACTAACCCTAGAAGTTTCCCAAACATAAACTTCTTCTCAACTACAACCACGACCTCGACCTCATCCTCCACTGCGTCTGACGAGGACATGGAGGAGAAGTATAGGAAGAAGAGAAAGCTGAAGGAGTACTTCCGGAGGCTTACAAGGCAGGTGCTCGCCAAGCAGGAGGAGATGCAGAAGAGGTTTCTAGAAGCCATGGACAAGAGGGAGCGGGAAAGATCAGCACAGCAAGAAGCTTGGAGGGTAGAAGAGATGGCGAGGATCAATAAAGAACATGACATTCTTATCCAAGAAAGATCCGCCGCCACCACCAAGGACGCCACCGTCATCGCATTCCTCCAGAAGTTGTCCGGCGGGCAGCAAAATCCTGCGCCGCCACCGCCTCCAAACCCGTGGGCTCCACCGCAGCCAAAACCAATAACGCAAGTAGTACAAGTACAACCTCGTGAACAACTTCAATTGTTGCCAGTTGACAACTACTTTGAAAACCAGAAAGCGAACATAACTAACGGCCATCAAGTTCGAAGTGCTTCTTCCTCTTTTTCTTCATCGAGGTGGCCAAAGGCAGAAGTTCATGCATTGATAAGGCTAAGGACGAGCATGGATCCCAAGTATCAGGAGAACGGGCCGAAAGGCCCATTGTGGGAAGACATATCTGCTGGAATGCAGAGACTTGGGTACAACAGGAGCGCCAAGAGATGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGTAACAAGCAGAGGCGCGAGCATAGCAAGACGTGTCCTTATTTCCAGGAGCTCGATGCTCTATACAGAGAGAAGAGCAAAACCCAGAATTACAACCCCTTCTGTGCGAATAATAAGCCGAATCACGAGATGCTGATGGAGCCGTTGATGGTGCAGCCGGAGCAGCAATGGAGGCCGCCTCCGCTTCAAGTGGAGGGAGAGGGTGGCGCCGGTGCGAGGGAAAATGCAGATAATGTGGTTCAGTTCGATGTGAAAGGAGAGGGGAGATTAGAGGGGGAAGATGAAGAGGAAGAGGAAGATGATATGGAAGAAGATGGAGATAGTGGGGAAGATGATCAAGGAGGACGTTATGAAATTGCAGCAACGAATCCTAAACTTCCTTCAGTGGACACCGTTGAATGA 1824 0.4995 MQLGDPSVLETSADGTMMAAVTATAPPEEAAAASAAANGGTEIEMMNHVVNMDAANSGDDIEKRSGGGGGGGGAGNRWPRQETFALLKIRSDMDAAFRDSSLKGPLWEQVSRKMAELGYDRSAKKCKEKFENVYKYHKRTKESRSGKQEGKAYKFFDQLQALENQFTVSHIPRQPPPPPPQPQQQPSSQMPTISYVTVPSTINPTLISPSAPPPPPPANIATTITNPRSFPNINFFSTTTTTSTSSSTASDEDMEEKYRKKRKLKEYFRRLTRQVLAKQEEMQKRFLEAMDKRERERSAQQEAWRVEEMARINKEHDILIQERSAATTKDATVIAFLQKLSGGQQNPAPPPPPNPWAPPQPKPITQVVQVQPREQLQLLPVDNYFENQKANITNGHQVRSASSSFSSSRWPKAEVHALIRLRTSMDPKYQENGPKGPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKQRREHSKTCPYFQELDALYREKSKTQNYNPFCANNKPNHEMLMEPLMVQPEQQWRPPPLQVEGEGGAGARENADNVVQFDVKGEGRLEGEDEEEEEDDMEEDGDSGEDDQGGRYEIAATNPKLPSVDTVE 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1249 607 CDD GT1 409 473 - -
Dere06g1249 607 CDD GT1 76 141 - -
Dere06g1249 607 SMART sant 406 468 IPR001005 -
Dere06g1249 607 SMART sant 74 136 IPR001005 -
Dere06g1249 607 MobiDBLite consensus disorder prediction 564 585 - -
Dere06g1249 607 MobiDBLite consensus disorder prediction 345 362 - -
Dere06g1249 607 MobiDBLite consensus disorder prediction 341 363 - -
Dere06g1249 607 MobiDBLite consensus disorder prediction 169 190 - -
Dere06g1249 607 MobiDBLite consensus disorder prediction 171 186 - -
Dere06g1249 607 Gene3D - 410 471 - -
Dere06g1249 607 Gene3D - 78 139 - -
Dere06g1249 607 FunFam Trihelix transcription factor GT-2 78 139 - -
Dere06g1249 607 Pfam Myb/SANT-like DNA-binding domain 76 162 IPR044822 -
Dere06g1249 607 Pfam Myb/SANT-like DNA-binding domain 408 495 IPR044822 -
Dere06g1249 607 ProSiteProfiles Myb-like domain profile. 402 466 IPR001005 -
Dere06g1249 607 PANTHER FI21293P1 31 534 - -
Dere06g1249 607 FunFam Trihelix transcription factor GT-2 410 471 - -
Dere06g1249 607 MobiDBLite consensus disorder prediction 532 607 - -
Dere06g1249 607 ProSiteProfiles Myb-like domain profile. 76 134 IPR001005 -
Dere06g1249 607 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1249 Dere-ChrDere06 24413636 24416180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1249 72 531 Trihelix Transcription Factor Family AT1G76880 53.689 5.60e-145 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere06g1249 Myb_DNA-bind_4 2.5e-22 CL0123