Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1248 ATGCTGGGGGACTCAGCTGCTTTAGAAGGTGGAGGAGCTAGCTCTGGGGATGATGCTTTGGCGGCGTCGGCAGCTGCTGCTGCATCGGCGGCAGGAGGAGGAGTACCCCATGACGGTGGTGAGTCAGCGGTTGCTGCGGCGGGTGATGGTGGTGGAGGAGGAGTTGGATCGAATTCAGGTGAAGAGGGTGGTGATGACCGGAGTTTCGGTGGCAACCGGTGGCCCCGCCAGGAGACGTTGGCGCTCCTGAAGATACGCTCCGACATGGACGTGGCGTTTCGAGATGCCAGCGTGAAGGGTCCCTTGTGGGAAGAGGTTTCCAGGAAGCTAGCAGAGCTTGGATACCATAGAAGCGCCAAGAAGTGCAAGGAGAAATTTGAGAACGTGTACAAGTACCACAAGCGAACAAAGGAAGGCCGAAGCGGAAAACCAGATGGCAAAACGTACCGTTTCTTCGATCAATTAGAGGCTCTCGATCATCATCATCTTCATCTTCAAAACCACCCTAATAATTCTTTATTAATCCATTCCTCTTCTTCTAACTCAGCTCCTCTTCCTGCACCACCAGTTTCAATCGTACCCACCACCACCACCACTCAACCTCCTCCTCCATTTATGGTAACGCCTAATCCACCTCCTCATGTAACTAATACTACTGTTCCATCAATGAGCGCTTCAATTCCTCCATTTTACCCACTACCAGCACCAGCTGCAGCAACGACGACAGCAAACCCTACTTTTATACCCTCGTTCGCGAGTATTCCGACGGATCTCTTGTCGAATTCTAGTTCTTCTTCGACGTCGTCCGAGGAGATGATAGAGGCGCGGCGGAAGCGGAAGCGGAAGTGGAAGGACTTCTTCGAGAGGCTGATGAAGGAGGTTATAGAGAAACAGGAGGAGCTGCAGAAGAGGTTCCTGGAGGCCGTAGAGAAACGCGAGCACGAGCGGATGGTTAGAGAAGAAGCCTGGAGAATGCTGGAGACGGCCAGGATCAATAAGGAGAGAGAAATATTGGCTCAGGAGAGATCCATAGCGGCGGCCAAAGACGCTGCCGTCATGGCTTTCTTGCAGAAGATCGCCGAACAACAGAATCTCGCTGAACCGCCACCTACGATGAATAACATTAATATCACGAATCCTCCGCCGCAGCCCGCGCCTGCGCCACTGCCAGTGCCAGCACCAGCGACAGCACTTGCACCACCTCCGCCACAACCCGCGGCGGTGCAACAATCAGCACCAGTTCTTTCTACTCCACCGGCACCGCAGTCGACGCAACAAATGATGACCAATATGGAAATTGTTACGAAAAATGACAATGGGGAGAATAATAACCTGATGATGCCACCTTCGACGACGACTGCATCATCGTCAAGGTGGCCAAAAGTGGAGGTAGAGACGCTGATTAAACTACGAACAAACCTGGACGTAAAGTACCATGAAAATGGGCCGAAGGGGCCATTGTGGGAGGAAATCTCTGCGGCGATGAGGAGGCTGGGGTACAACCGGAGCTCGAAGAGGTGTAAGGAGAAGTGGGAGAACATCAACAAGTACTACAAGAAGGTGAAGGAGAGCAACAAGAAGAGGCCAGAAGATTCCAAGACCTGCCCGTACTTTCATCAGCTGGATGCTCTATACAGAGAGAAGAATTTCAAGCTGCCGTCGGCACCGCCGCCGCCGGAGAACATGATGGGTGCGCCACTAATGGTGCGCCCGGAGCAGCAGTGGCCGCCGCAGCAACAGCAGCAGCAAGATACACGGCCGGGGCCGGAGGTGATGATGGGAAGCGCGGGAAATGATACAATGGAAGAAGATGAAGAGGAGGAAGATAAGGATGGAGAGGAAGAAGACGATGAGGATGATGATGGAGGAAGTAGTACCTATGAGATAGTGGCAAGCAAGCCACCAACTTCAGTGGGTGCTTCTGAGTGA 1929 0.5308 MLGDSAALEGGGASSGDDALAASAAAAASAAGGGVPHDGGESAVAAAGDGGGGGVGSNSGEEGGDDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRSGKPDGKTYRFFDQLEALDHHHLHLQNHPNNSLLIHSSSSNSAPLPAPPVSIVPTTTTTQPPPPFMVTPNPPPHVTNTTVPSMSASIPPFYPLPAPAAATTTANPTFIPSFASIPTDLLSNSSSSSTSSEEMIEARRKRKRKWKDFFERLMKEVIEKQEELQKRFLEAVEKREHERMVREEAWRMLETARINKEREILAQERSIAAAKDAAVMAFLQKIAEQQNLAEPPPTMNNINITNPPPQPAPAPLPVPAPATALAPPPPQPAAVQQSAPVLSTPPAPQSTQQMMTNMEIVTKNDNGENNNLMMPPSTTTASSSRWPKVEVETLIKLRTNLDVKYHENGPKGPLWEEISAAMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKRPEDSKTCPYFHQLDALYREKNFKLPSAPPPPENMMGAPLMVRPEQQWPPQQQQQQDTRPGPEVMMGSAGNDTMEEDEEEEDKDGEEEDDEDDDGGSSTYEIVASKPPTSVGASE 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1248 642 MobiDBLite consensus disorder prediction 409 424 - -
Dere06g1248 642 CDD GT1 72 137 - -
Dere06g1248 642 SMART sant 70 132 IPR001005 -
Dere06g1248 642 SMART sant 455 517 IPR001005 -
Dere06g1248 642 Pfam Myb/SANT-like DNA-binding domain 457 544 IPR044822 -
Dere06g1248 642 Pfam Myb/SANT-like DNA-binding domain 72 158 IPR044822 -
Dere06g1248 642 MobiDBLite consensus disorder prediction 573 588 - -
Dere06g1248 642 MobiDBLite consensus disorder prediction 570 642 - -
Dere06g1248 642 MobiDBLite consensus disorder prediction 1 73 - -
Dere06g1248 642 PANTHER FI21293P1 40 599 - -
Dere06g1248 642 Gene3D - 74 135 - -
Dere06g1248 642 Gene3D - 459 520 - -
Dere06g1248 642 ProSiteProfiles Myb-like domain profile. 72 130 IPR001005 -
Dere06g1248 642 MobiDBLite consensus disorder prediction 374 408 - -
Dere06g1248 642 FunFam Trihelix transcription factor GT-2 459 520 - -
Dere06g1248 642 ProSiteProfiles Myb-like domain profile. 451 515 IPR001005 -
Dere06g1248 642 FunFam Trihelix transcription factor GT-2 74 135 - -
Dere06g1248 642 Coils Coil 284 311 - -
Dere06g1248 642 CDD GT1 457 522 - -
Dere06g1248 642 MobiDBLite consensus disorder prediction 366 424 - -
Dere06g1248 642 MobiDBLite consensus disorder prediction 599 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1248 Dere-ChrDere06 24391359 24394079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1248 66 575 Trihelix Transcription Factor Family AT1G76880 56.685 2.38e-163 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere06g1248 Myb_DNA-bind_4 1.2e-22 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1248 06 24391359 24394079 Dere06g1248 06 24391359 24394079 ECH