Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1243 ATGGGTAGGAAGAAGCCGACCTCCCGCGACGATGATAACCCAACCAATGCGTCTCAAGGCGGTGGAAAGTTGAAAAAGAAGGGGCTAGTGATCGATGATGATGAGTATTCTATCGGAACGGAGCTCTCGGAGGAGCTGCCGGCTCAGGAAGAGAAGCCTGCGGTGACGGGAAATAAGAAAGGTAAGAAGGGTAACTTGAAGTTATCAAAAGCTGAGGACGAAGATGTGGAAAAGGTGATGGATGATGATGATGTACCTGAAGTTGTGTTTACTGGGAAGAAGAAGGGGAAATCGAAGAAGGGTGGTGGTAACAGTGTTTTTACTGCCCCGAGCTTTGGTTTGCTTGGTGATGAGGAGGATGGAGAGGATGATGATGAAGACAAACAATCCGGCTTAACTGGTGGGCAAGACGGTGATGAGGATGATGAACCAGTGGTTAGTTTTTCGGGTAAGAAGAAGCCCTCAAAGGTTTCCAAAAAGAAGGGTGGTAGTTTGTTCACTGCATCAGCTTTTGATGCTATTGATGATGATAATGAAGGTGCAGTGATTGATAATTCTGTGGAAAGCAGCAGAGAAGAGAATAATGAAATGGATGAACCGGTTATTGCTTTTACGGGGAAGAAAAAATCATCAAAAAGTAGCAAGAAGGGTGGTGCTGCGTTTACGGCATCTAGTTTTGGTGATTCTGATGGAGAGCAGGAAAGAAATGAAAAAGAAGATGAGGATGAAGATGTTGCTCCGATCACTTTCTCAGGGAAGAAAAAGAAGTCATCAAAGTCTTTGAAGAAGGCTGTTAATTCATTTAGTGCGGCTTTCGCTGATGAGGATGTTGATGATGATGTTTCTGCGCTTGAGTCTGCTAAAGCTAGTGAAGATAAGGTTGAGGATGAAGATGTTTCTGTAGTTACATTTTCAGGTAAAAAGAAGTCTTCTACTAAGAAAAATAAGACTTCTACGGCTAAAGCTAGTGATGACTTTGAATTTGGTAGTGAAAGTGTGGATGTTGTCGAGCCTGAGCAACCTAGTGTGGCAGACAACAACAGTGCTAATAAGAATGCAGAGGTGACTGAAACTACAAAAAATAAGAAGAAGAAGAATAAAAAGAGTGGAAGAACTGCCCAAGAAGAGGAAGATTTGGACAAGCTTCTTGCTGAGCTTGGTGAGGGGCCTACGGCAAAACCTGCGCCTCCTCTGGCACAGGATGATGAAGTTCAGGCTGCTTCTGAAGTGGCTGCTTCTGCTGCTGATGAGGGCGAAAAAGAAGGGGAAGAAGAGACAGTGGAGTCAGCAGCTGCGAAAAAGAAGAAAAAGAAAAGGGAAAAGGAAAAGGAGAAGAAGGCGGCAGCTGCTGCAGCGGCGGCAGCTGGAAGTGCACCAGATAACGAAAAGAAAGAAGTTAAATCTGAGACTACAGAATCAAAGAAGAATGATTCCAAGACTAAAGCAGCTGACAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCACTGGCTCGAAGAAAAGAGGCTGAAGAGAGGAAGAAAAGGGAAGAAGAGGAGAGGCTAAGGAAGGAAGAAGAGGAACGACGTAGGCAAGAGGAACTTGAGAGACAAGCAGAAGAGGCAAGACGTAGGAAAAAGGAGAGAGAGAAGGAAAAGCTCCAGAAGAAGAAGCAAGAAGGTAAATTACTAACTGGTAAGCAGAAGGAAGAAGCCCGCCGTTTGGAGGCAATGAGAAAGCAGTTTCTTGCTGGTACAGGGGCTGTCTCTCTCCCTTCAGGGGACTCTGGTGCACCATCCAAAAGACCCGTATATCAGACAAAGAAGTCAAAACAAACCCAACATCATCAGAATGGTACTGCCCCTGTTAAGGCAGCTGAAATTGTAGAAGCGAAGGAAAATCAGGAGACCGTTCCTACTGCAGACTCGTTGGAACCAGAGAAGGTTGAAGTGGATTCAATGCAGGATGAGGATAAAGCTGAACCATCTGAAGCTGTTGAAGAAGGTGAAGTTGAAGATGATGTGGAGGATGAATGGGATGCCAAGAGCTGGGATGACGTTAATTTGAATGGAAAGAGTGCATTTGCTGATGAGGAGGCTGACTCTGAGCCGGAACCAAATGTGAAAAAAGAGATGAAAAATGTTGTACCAACACAAAATGCCGCCCCTCCAGCTGTTGTCAGATCAGCAGGCCCAGCTAAGAAAGCTGTTTCTCAGCCTCTGACTGAGCAAATTGAAAGTAAAAAGCAGGTTGAGAAGCAACCGGCAAATTCAGCTGCACCTCCTAAACCAAGTGGAGAGAACCTTCGTTCCCCCATTTGCTGTATTATGGGTCATGTGGACACAGGAAAAACTAAGCTGCTGGATTGTATTCGAGGTACTAATGTTCAGGAAGGCGAGGCTGGTGGTATCACACAACAGATTGGTGCAACATATTTTCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTAAAAGCTGATGCAAAGCTGAAAGTTCCCGGTCTTCTGGTGATTGATACTCCTGGGCATGAATCGTTTACTAACTTAAGGTCACGGGGTTCAGGTTTATGTGATATTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAACCACAGACAATAGAATCACTCAATCTATTGAAAATGAGGAATACAGAATTCATCGTTGCATTGAATAAGGTTGACAGACTTTATGGGTGGAAAGTATGTCGCAATTCTCCTATTGTTAAGGCAATGAAGCAGCAGACTAAGGATGTGCAAAATGAGTTCAATATGAGACTTACACAGATTATCACTCAATTCAAGGAACAGGGGTTAAACACTGAGTTGTACTATAAAAACAAAGAAATGGGAGAAACCTACAGTATTGTACCTACTAGTGCTATAAGTGGTGAAGGAATTCCGGATTTGTTGTTATTGTTGGTTCAATGGACACAGAAAACAATGATTCAGAAACTTACATATAGTGATGAAGTGCAGTGTACGGTTTTGGAGGTCAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTCTTGGTTAATGGTGTTCTTCATGAAGGAGATCAAATAGTTGTGTGTGGAATGCAGGGGCCTATTGTAACCACAATTCGAGCCTTGTTGACACCTCATCCTATGAAGGAGCTCCGTGTTAAGGGGACTTATCTGCATCACAAAGAAATCAAGGCTGCTATGGGTATTAAAATCACTGCCCAGGGGCTTGAGCATGCTATTGCTGGCACTGCTTTATATGTGGTAAAGCCTGACGATGATTTAGAGGATGTTAAAGAAGCAGCTATGGAAGATATGAAGTCAGTTATGAGCAGGATAGACAGGAGTGGTGAGGGAGTTTGTGTACAGGCATCCACCCTTGGTTCATTGGAAGCGTTGCTGGAGTTTTTGAAGACACCAGAAGTGAATATTCCTGTTAGTGGTATAAGCATAGGCCCTGTACATAAAAAAGATGTAATGAAGGCCAGCGTAATGCTTGAAAAGAAGAAAGAGTTTGCCACTATCTTGGCATTTGATGTCAAAGTCAATCAGGAGGCTAAGGATCTTGCAGAAGAACTGGGTGTGAAAATTTTTATGGCTGATATCATTTATCACCTATTTGACCAATTTAAGGCCTATATTGACAACATTAAGGAGGAAAAGAAGAGAGAAGCAGCTGATGAGGCAGTCTTCCCATGTGTTCTGAAAATCTTACCAAATTGCGTATTCAACAAGAAGGATCCTATTGTTTTAGGAGTTGATATTCTTGAAGGCATTGCAAAGGTTGGGACTCCAATTTGTATTCCTTCCAGAGAGTTCATTGACATCGGTCGCATTGCATCAATTGAAAATAACCATAAGCCTGTTGATTATGCCAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATCCGGAGGAGCAACAAAAAATGTATGGAAGGCATTTTGAGATTGATGATGAACTTGTAAGCCATATCACAAGGAGATCTATTGATATCCTGAAATCTAATTATCGGGATGATCTGACTATGGATGAATGGAGGCTGGTTGTGAAATTGAAAAATCTTTTCAAGATTCAATGA 4068 0.4297 MGRKKPTSRDDDNPTNASQGGGKLKKKGLVIDDDEYSIGTELSEELPAQEEKPAVTGNKKGKKGNLKLSKAEDEDVEKVMDDDDVPEVVFTGKKKGKSKKGGGNSVFTAPSFGLLGDEEDGEDDDEDKQSGLTGGQDGDEDDEPVVSFSGKKKPSKVSKKKGGSLFTASAFDAIDDDNEGAVIDNSVESSREENNEMDEPVIAFTGKKKSSKSSKKGGAAFTASSFGDSDGEQERNEKEDEDEDVAPITFSGKKKKSSKSLKKAVNSFSAAFADEDVDDDVSALESAKASEDKVEDEDVSVVTFSGKKKSSTKKNKTSTAKASDDFEFGSESVDVVEPEQPSVADNNSANKNAEVTETTKNKKKKNKKSGRTAQEEEDLDKLLAELGEGPTAKPAPPLAQDDEVQAASEVAASAADEGEKEGEEETVESAAAKKKKKKREKEKEKKAAAAAAAAAGSAPDNEKKEVKSETTESKKNDSKTKAADKKVPKHVREMQEALARRKEAEERKKREEEERLRKEEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRKQFLAGTGAVSLPSGDSGAPSKRPVYQTKKSKQTQHHQNGTAPVKAAEIVEAKENQETVPTADSLEPEKVEVDSMQDEDKAEPSEAVEEGEVEDDVEDEWDAKSWDDVNLNGKSAFADEEADSEPEPNVKKEMKNVVPTQNAAPPAVVRSAGPAKKAVSQPLTEQIESKKQVEKQPANSAAPPKPSGENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKVCRNSPIVKAMKQQTKDVQNEFNMRLTQIITQFKEQGLNTELYYKNKEMGETYSIVPTSAISGEGIPDLLLLLVQWTQKTMIQKLTYSDEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTALYVVKPDDDLEDVKEAAMEDMKSVMSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVNIPVSGISIGPVHKKDVMKASVMLEKKKEFATILAFDVKVNQEAKDLAEELGVKIFMADIIYHLFDQFKAYIDNIKEEKKREAADEAVFPCVLKILPNCVFNKKDPIVLGVDILEGIAKVGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNPEEQQKMYGRHFEIDDELVSHITRRSIDILKSNYRDDLTMDEWRLVVKLKNLFKIQ 1355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1243 1355 Gene3D - 1107 1211 IPR036925 -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 282 303 - -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 275 762 - -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 690 704 - -
Dere06g1243 1355 Pfam Elongation factor Tu domain 2 1002 1080 IPR004161 GO:0005525
Dere06g1243 1355 CDD IF2_eIF5B 766 976 - -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 189 205 - -
Dere06g1243 1355 FunFam Eukaryotic translation initiation factor 5B 1218 1355 - -
Dere06g1243 1355 NCBIfam small GTP-binding protein domain 768 892 IPR005225 GO:0005525
Dere06g1243 1355 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 460 1352 IPR015760 -
Dere06g1243 1355 CDD IF2_aeIF5B_IV 1226 1321 - -
Dere06g1243 1355 Coils Coil 420 452 - -
Dere06g1243 1355 Gene3D - 758 985 IPR027417 -
Dere06g1243 1355 Gene3D Translation factors 1218 1355 - -
Dere06g1243 1355 Coils Coil 487 558 - -
Dere06g1243 1355 PRINTS GTP-binding elongation factor signature 847 858 IPR000795 GO:0003924|GO:0005525
Dere06g1243 1355 PRINTS GTP-binding elongation factor signature 831 841 IPR000795 GO:0003924|GO:0005525
Dere06g1243 1355 PRINTS GTP-binding elongation factor signature 767 780 IPR000795 GO:0003924|GO:0005525
Dere06g1243 1355 PRINTS GTP-binding elongation factor signature 883 892 IPR000795 GO:0003924|GO:0005525
Dere06g1243 1355 MobiDBLite consensus disorder prediction 1 259 - -
Dere06g1243 1355 FunFam Eukaryotic translation initiation factor 5B 1105 1211 - -
Dere06g1243 1355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 764 1054 IPR027417 -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 637 654 - -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 369 384 - -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 597 614 - -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 460 572 - -
Dere06g1243 1355 CDD aeIF5B_II 987 1097 - -
Dere06g1243 1355 Pfam Translation-initiation factor 2 1090 1204 IPR023115 -
Dere06g1243 1355 Pfam Elongation factor Tu GTP binding domain 767 975 IPR000795 GO:0003924|GO:0005525
Dere06g1243 1355 MobiDBLite consensus disorder prediction 341 355 - -
Dere06g1243 1355 FunFam eukaryotic translation initiation factor 5B 986 1105 - -
Dere06g1243 1355 FunFam Eukaryotic translation initiation factor 5B 757 985 - -
Dere06g1243 1355 Gene3D Translation factors 986 1106 - -
Dere06g1243 1355 MobiDBLite consensus disorder prediction 655 675 - -
Dere06g1243 1355 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 763 979 IPR000795 GO:0003924|GO:0005525
Dere06g1243 1355 SUPERFAMILY Translation proteins 1222 1354 IPR009000 -
Dere06g1243 1355 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1088 1217 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1243 Dere-ChrDere06 24288162 24297259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1243 1 250 Eukaryotic Initiation Factors Gene Family AT1G76810 40.377 3.45e-08 56.6