Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1218 ATGGATGAGAACTACCTCCACAACAGTTTTGCTCATACGGGCAAGGTTTTATCAGCCAAGGTTATACGAAATAAGCAAACTGGTCAGTCAGAGGGGTATGGATTTGTTGAGTTTTATTCGCGCGCAACAGCTAAGAAGATTTTGAACAGCTATAATAATACTATGATGCCAAATACTGATCAGCCCTTTCGTCTGAATTGGGCTACATTCAGTGCCGATGATAGGAGAATAGATGCAAGTTCTAACCTGTCTATATTTTTTGAGGACTTGGCTGTAGATGTTACTGATGCCATGCTGCAGGAAACCTATGCTAGTAGATATTCATCTGTTAAGGGAGCAAAAGTTGTCTTTGATTCTAATACTGGCTATTCAAAAGGTTATGGTTTTGTAAGGTTTGGGGATGAAAATGAGAGTTCTAGGGCCATGACTGAGATGAATGGATTCTATTGTTCAAGTAGGCCTATGCGAATAGGTGTTGCAACCCTAAAGAAATCCTATGGATATCAGCAACAGTATTCTTCCCAAGCCGTGGTATTAGCTAATGGACATTCATCTAATGGTGCTACCAACCAAGGTACGCAGCCTGAAGGGGACTTAAGTAACATAACTATTTTTGTTGGAGGGCTTGATTCTGATGTCAATGATGATGATCTTAGACAACCATTCTTGCAATTTGGTGAGGTTGTCTCTGTCAAAATACCTTTGGGTAAAGGTTGTGGTTTTGTTCAATTTTTTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATCGAATGGGACAGTAATTAGGAAGCAGACAGTGCATCTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACGGATTCTAACGGAGGTCATCATTGA 870 0.4092 MDENYLHNSFAHTGKVLSAKVIRNKQTGQSEGYGFVEFYSRATAKKILNSYNNTMMPNTDQPFRLNWATFSADDRRIDASSNLSIFFEDLAVDVTDAMLQETYASRYSSVKGAKVVFDSNTGYSKGYGFVRFGDENESSRAMTEMNGFYCSSRPMRIGVATLKKSYGYQQQYSSQAVVLANGHSSNGATNQGTQPEGDLSNITIFVGGLDSDVNDDDLRQPFLQFGEVVSVKIPLGKGCGFVQFFDRKNAEEAIQASNGTVIRKQTVHLSWGRSPGNKHWRTDSNGGHH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1218 289 Gene3D - 181 280 IPR012677 -
Dere06g1218 289 Gene3D - 78 180 IPR012677 -
Dere06g1218 289 FunFam Polyadenylate-binding protein RBP47B 71 173 - -
Dere06g1218 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 70 IPR000504 GO:0003723
Dere06g1218 289 Gene3D - 1 69 IPR012677 -
Dere06g1218 289 SUPERFAMILY RNA-binding domain, RBD 191 287 IPR035979 GO:0003676
Dere06g1218 289 FunFam tRNA selenocysteine 1-associated protein 1 1 69 - -
Dere06g1218 289 SMART rrm1_1 1 66 IPR000504 GO:0003723
Dere06g1218 289 SMART rrm1_1 84 158 IPR000504 GO:0003723
Dere06g1218 289 SMART rrm1_1 203 270 IPR000504 GO:0003723
Dere06g1218 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 162 IPR000504 GO:0003723
Dere06g1218 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 59 IPR000504 GO:0003723
Dere06g1218 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 268 IPR000504 GO:0003723
Dere06g1218 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 155 IPR000504 GO:0003723
Dere06g1218 289 CDD RRM1_SECp43_like 1 71 - -
Dere06g1218 289 SUPERFAMILY RNA-binding domain, RBD 1 162 IPR035979 GO:0003676
Dere06g1218 289 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 278 - -
Dere06g1218 289 CDD RRM2_SECp43_like 82 161 - -
Dere06g1218 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 274 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1218 Dere-ChrDere06 23161648 23162517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1218 6 273 Eukaryotic Initiation Factors Gene Family AT2G36660 22.143 2.57e-14 71.2