Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1200 ATGTCCCAATCGCGGCAACCCTACACAACGAAGTTATCTACTCACCATACAAGGTGTGTTATTTCCATATGCTTGTTAACGGTGGCGCGCCGTCGGGAATCAGGGGAGTTTGTCAGGTTCTCTGCAGAACACGGCGGCGACGGGGAAGGAAGTGAGTACCGGCAGTCGCAGTCGGTGGGGTTCAACGAGGAGAGGTTGCGGCAAGAAGAGGTGGCAGGGACGACGGCAATGGCGGAATCTGTGGAGGCTGTGATTCAAGGGCATAACAGAGCTGGAGAGCTGTCGGCGATGGTGTCGGCGCTTACGCATGTGGTGTCGTCAGGATCTTATGGAGAGAGAGGCACTGAATGGGTCCAAGGAATTGGTGGGTTTCCGATGATGCCAGGTTTTGGCCATGTTTCGTCTCCTCGTTTGTCTCCTTCTTCTTCTTCAGGCCCTGTTCTGGGCTCTGCCCCTGGTTCATGGGTTGGTCAGAAAAGAGGTCGTGAGGAAGACGAAGCACTCTACAAAGCCATTGGTGACTTCTCAGCACCATCACAGGGCGAGTCATCATCATCAGTGTCGGAGGTGGAAGCTGCGAATATCGCCACCACTCCTGCGGCTGCGGTGGCGGCTGCTACAGCCACCACCGCTTTGCCGGTGACGCCGTCGGGAGAAACAGGCTCCTATGAGGAAACAGGGGAGAGGAGGAGGAGATACAGAGGAGTGAGGCAGAGGCCATGGGGTAAATGGGCGGCGGAGATTCGCGATCCCCAAAAGGCGGCGAGAGTTTGGCTGGGCACGTTTGACACGGCGGAGGCGGCGGCCAGAGCTTACGACGAAGCGGCATTGAAGTTCAGAGGTAGCAGAGCTAAACTAAACTTCCCGGAAAACGTTAGAGCAGTTCCGCCGCCCTTTCAAAATTTTCCGGCCACCCCCGGCCTCCTCCAGCAGTCGATAGCAGCGCCGCCGTCCATGCAGGCGCCGTCTTATCAAGGGTCCTCTGATTTGTTGACAGACTATTGGAATTACTCTCAGCCGACACAGAGCTCCGGCGACTTCCACGGACAATGGCAGCAGCTGCCGGCGAGTTTGATGCAGCAGTGGCTCTATAATCCGCAACTGAGTGTTCTCCAATCGTCTTCCTCGTTGTTGTCGCCATCATCTCTGTCTTCTTCTTCATCTCCCACCGCATTTTCGCCTTCTAGTCAATTATCCTCTGCTTCATTTCCCCAGTTTTCCGGTCAGCAAGTAGGGTATTTCCGACCACCGGAAAACCAGACTCCGGTACGAGATACCTCAGCTTTTCCGGCGTCGACGTGGTCAGACACTGGCAGCTATCCTCCTCGGAGTGATTGA 1338 0.5583 MSQSRQPYTTKLSTHHTRCVISICLLTVARRRESGEFVRFSAEHGGDGEGSEYRQSQSVGFNEERLRQEEVAGTTAMAESVEAVIQGHNRAGELSAMVSALTHVVSSGSYGERGTEWVQGIGGFPMMPGFGHVSSPRLSPSSSSGPVLGSAPGSWVGQKRGREEDEALYKAIGDFSAPSQGESSSSVSEVEAANIATTPAAAVAAATATTALPVTPSGETGSYEETGERRRRYRGVRQRPWGKWAAEIRDPQKAARVWLGTFDTAEAAARAYDEAALKFRGSRAKLNFPENVRAVPPPFQNFPATPGLLQQSIAAPPSMQAPSYQGSSDLLTDYWNYSQPTQSSGDFHGQWQQLPASLMQQWLYNPQLSVLQSSSSLLSPSSLSSSSSPTAFSPSSQLSSASFPQFSGQQVGYFRPPENQTPVRDTSAFPASTWSDTGSYPPRSD 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1200 445 MobiDBLite consensus disorder prediction 135 162 - -
Dere06g1200 445 FunFam Ethylene-responsive transcription factor 2 231 290 - -
Dere06g1200 445 SMART rav1_2 232 295 IPR001471 GO:0003700|GO:0006355
Dere06g1200 445 CDD AP2 240 291 IPR001471 GO:0003700|GO:0006355
Dere06g1200 445 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Dere06g1200 445 PRINTS Ethylene responsive element binding protein signature 255 271 IPR001471 GO:0003700|GO:0006355
Dere06g1200 445 Pfam AP2 domain 232 281 IPR001471 GO:0003700|GO:0006355
Dere06g1200 445 PANTHER DNA-BINDING DOMAIN 198 379 IPR044808 GO:0003700|GO:0009873
Dere06g1200 445 MobiDBLite consensus disorder prediction 383 445 - -
Dere06g1200 445 Gene3D AP2/ERF domain 231 291 IPR036955 GO:0003700|GO:0006355
Dere06g1200 445 MobiDBLite consensus disorder prediction 212 231 - -
Dere06g1200 445 MobiDBLite consensus disorder prediction 41 61 - -
Dere06g1200 445 MobiDBLite consensus disorder prediction 135 149 - -
Dere06g1200 445 ProSiteProfiles AP2/ERF domain profile. 232 289 IPR001471 GO:0003700|GO:0006355
Dere06g1200 445 SUPERFAMILY DNA-binding domain 232 290 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1200 Dere-ChrDere06 22552368 22554279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1200 224 305 AP2-EREBP Transcription Factor Family AT2G33710 70.732 1.22e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere06g1200 AP2 2.5e-15 CL0081