Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1196 ATGGATCCTGATGCTGACGAGTTGCCCCAATATATACATATAAATCAGAACGAATTTTTGAATAGAAGGCATATGAAGCAGAAAGAGGAGGACATTGCTATATGTGAATGCAAATATAATGCCAGCAGCCCTGATAGTGCATGTGGGGATACGTGTCTCAATGTACTAACCAGCTCTGAATGCACCCCTGGCTATTGCCCCTGTGGCATCTTTTGCAAAAATCAGAGATTTCAGAAGCATGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGGGGATGGGGTCTTTTGGTTGACGAGAACATTAAGGCAGGACAGTTTATCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAGCGTAGATCCCAGGCTTATGAAACTCAAGGTCTCAAGGATGCATTTATAATTTGTCTTAATGCCTCTGAATCTATTGATGCAACTAGAAAGGGAAGCCTCGGTAGATTTATAAATCATTCCTGTCAGCCGAATTGTGAGACAAGGAAATGGAATGTCTTGGGTGAGATAAGAGTTGGAATATTTGCTAAACAAGATATTCCTGCTGGAGCTGAATTGGCATATGATTATAATTTCGAATGGTTTGGTGGTGCTAAGGTCCGTTGCCTCTGTGGTGCAGCCAAATGTTCAGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATTTATGGGAAGATGATGATGAAAGGTACTCGGTTGAGAAAATTCCAGTATATGACTCTGCAGAGGATGAGCCTCCCTCAAAGGTCCTTAGAAACTTGAATTCTGATAATCTTGGGAATAAATTTAATGAAAAAACTGAACACACCATGGATGTTATTATAAAACCTGAGCAACTACCAGAGTCGACTGCTTTTACTGTTCAGCCACTTGATTCAGTTCCGATGAAGGATTTACATGCCAATTCGAGAAAAGCTGAAGTAGGAAGTGAGGATATGCAATTGTACACAAGAGATACTCAACAGGCCTTTTCACAAAATAATGCAATGATATCACGTATCCGAAGTAGTACTGCAGGCCGAAACTATCGTGTTAGAGCTGGCTCCATTTCTACCAAAAGATCAAAGACATATAGTGGGAGGTTTAAAAATATTGTACAGAAGCAAGTGGATGCAAAGTCTGCAGCTGAATGTCTAGCATCAAAGGAGGCACAAGAGGAGATTTTAAGATATGAGGAAATGAAGAATGACGCAACTACTGCACTTGATACATTGTACAATGAAATACGACCAGCCATTGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCCACGAGTGTAGCAGAGAAGTGGATTGAAGCTTGCTGCTTGAAATTGAAGGCAGAGTTTGACCTTTACTCCTTCATTGTCAAAAATATTGCCTGCACTCCTACAAAGCCACGTGGCCAACCAAAACCTTCTTCTCAAGTTCATAATGAAAACGAATTTAAGCTCTTGACGAATTGA 1485 0.404 MDPDADELPQYIHINQNEFLNRRHMKQKEEDIAICECKYNASSPDSACGDTCLNVLTSSECTPGYCPCGIFCKNQRFQKHEYAKTKLFKTEGRGWGLLVDENIKAGQFIIEYCGEVISWKEAKRRSQAYETQGLKDAFIICLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPAGAELAYDYNFEWFGGAKVRCLCGAAKCSGFLGAKSRGFQEDTYLWEDDDERYSVEKIPVYDSAEDEPPSKVLRNLNSDNLGNKFNEKTEHTMDVIIKPEQLPESTAFTVQPLDSVPMKDLHANSRKAEVGSEDMQLYTRDTQQAFSQNNAMISRIRSSTAGRNYRVRAGSISTKRSKTYSGRFKNIVQKQVDAKSAAECLASKEAQEEILRYEEMKNDATTALDTLYNEIRPAIEEHERDSQDSVSTSVAEKWIEACCLKLKAEFDLYSFIVKNIACTPTKPRGQPKPSSQVHNENEFKLLTN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1196 494 SUPERFAMILY SET domain 8 220 IPR046341 -
Dere06g1196 494 Pfam SET domain 94 200 IPR001214 GO:0005515
Dere06g1196 494 MobiDBLite consensus disorder prediction 471 494 - -
Dere06g1196 494 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Dere06g1196 494 SMART PostSET_3 207 223 IPR003616 -
Dere06g1196 494 MobiDBLite consensus disorder prediction 474 494 - -
Dere06g1196 494 Gene3D SET domain 1 237 IPR046341 -
Dere06g1196 494 Pfam AWS domain 44 80 IPR006560 GO:0005634|GO:0042054
Dere06g1196 494 SMART set_7 83 206 IPR001214 GO:0005515
Dere06g1196 494 Coils Coil 393 413 - -
Dere06g1196 494 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Dere06g1196 494 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Dere06g1196 494 FunFam Histone-lysine N-methyltransferase 1 235 - -
Dere06g1196 494 PANTHER SET DOMAIN PROTEINS 6 479 - -
Dere06g1196 494 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1196 Dere-ChrDere06 22503831 22520739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1196 65 222 C2H2 Transcription Factor Family AT2G23740 33.708 6.87e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere06g1196 SET 5.7e-18 No_clan