Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1180 ATGTTTCTGGATGCTTCTCTCGATCGGCGGAAAATACTTCGAAACTCCTACATATTTAGACACAGACATGAGGAACCATATACAAATTTTACTAGGGTTGCGGGTGGGTCTATCTTTTCAATTTTAACTAACACGAGCAAGAACACTGCAAGGAGCCTCAGTGGTAATCGGCCTTCTTCCCTGCGAAGTGTGAACAACTCCTTTGCAATTGAAAAGAAAATGTCGTTGGTGGCTAACGAGGATTTTCAGCACATTTTGCGTGTGCTCAACACTAACGTAGATGGAAAGCAGAAGATTCAGTTTGCCCTTACCTCTATCAAAGGTATTGGCAGGCGATTCGCCAACATTTGCTGTAAGAAGGCCGATGTCGACATGAACAAGAGAGCTGGAGAACTTAGTGCAGCCGAGCTTGATCAAATCATGGTGGTTGTCGCCAACCCTCGACAATTTAAGATCCCAGACTGGTTTCTGAACAGGAAGAAGGACTACAAGGATGGGAAATATTCTCAGGTAGTGTCCAATGCACTGGACATGAAGTTGAGGGATGATTTGGAGCGATTGAAGAAAATCAGAAATCACCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTTCGTGGCCAGCATACCAAGACTACTGGCCGCAGGGGAAAGACTGTTGGTGTCTCTAAGAAGCGTTGA 678 0.4572 MFLDASLDRRKILRNSYIFRHRHEEPYTNFTRVAGGSIFSILTNTSKNTARSLSGNRPSSLRSVNNSFAIEKKMSLVANEDFQHILRVLNTNVDGKQKIQFALTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDQIMVVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1180 225 SUPERFAMILY S13-like H2TH domain 86 221 IPR010979 GO:0003676
Dere06g1180 225 ProSitePatterns Ribosomal protein S13 signature. 194 207 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere06g1180 225 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 73 225 - -
Dere06g1180 225 Pfam Ribosomal protein S13/S18 87 215 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere06g1180 225 ProSiteProfiles Ribosomal protein S13 family profile. 88 218 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere06g1180 225 Hamap 30S ribosomal protein S13 [rpsM]. 85 225 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Dere06g1180 225 FunFam 40S ribosomal protein S18 74 153 - -
Dere06g1180 225 Gene3D - 74 153 - -
Dere06g1180 225 FunFam 40S ribosomal protein S18 165 216 - -
Dere06g1180 225 Gene3D 30s ribosomal protein s13, domain 2 165 215 IPR027437 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1180 Dere-ChrDere06 22216906 22220106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1180 74 225 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 93.421 2.08e-105 299