Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1172 ATGAGAGAGGGCAGAGGGCTTCTTCGCCTCTATTTTTCTCTACGCTCTCCAACCAAACTCAACACACTTACAAAATTACCATATTCTACTTGTGCTTCTCATGGGCCCTTCACCTCTTCTTTCTCCTCAACCCCTAATGGTGAAGACGAGAAGACATCACCGAAGTCCCTAAGGGATTCACTGCTTCTAGAAAAGTTTAGACTAAGAAAACTCAAAGGTTCTTCTACAACTTCGCAGGGTAGTCCCCAAGCATCAAGTTGTACTCCAAAGAAGGTAACTGAAGAAGGCTTGAAGAATGAGACTGAACCCACGAAGGTACTGACCAATTTTAAGGAGTTAGGTTTGAGTGAGGAGCTTATTGGGGTTTTGGAGAGTATAGGTGTCTTTGTTCCTAGTGAGACTCAATGTGTAGGAATTCCTGCTGTTTTGGAAGGGAAGAGTGTGTTGTTAAGTTCACTATCTGGGCCTGATAGGACATTGGCATACATGTTGCCTCTTATTCAGCTTCTGAGGCAAGATGCGGAGTTGTCTCATTCGAATTTGCAGTATCCCCGGGCCATTGTGCTTTGTGCTTCAGAGGAGAAAGCTGAACAGTGCTTTAATGCTGCAAGATATATTGTCCATCATGCAAAATTGAAGTCTGCAAAGGAGGGTTCGTCACCAAATAATGAGCAGTCTAATGTCTCAATTGGCCTCATAATTGGATCTCCTGGTGAGATTCTTCAATACATTGGAGAGCGGACAGTTATTCCTGATGAAATAAGATATTTGGTATTGGATGAGGCAGACTGCTTCTTCAATAGCGGCCTTGGCCCTGAAATGCGAAAGATTATCAGACCATTACAAGATTATGCTTCGAAATCCACTACCATAGGATTGCAATCTGTTTTGGTCACTTCAACAATAACAGAGATTTTGGGTGAAGAGTCTCCCATTATAAAGCATCTTGAGAATAATCATGCAGGAAAAATTTCTGCAATGTTATTAGAATTGGATCCAACTGAAGTCTTTCATCTCACAGAGTCCTTGGATGCTTTGAGGAAAAAAATGACAGAGGCCATGGATTCCCTTCTATGA 1077 0.4215 MREGRGLLRLYFSLRSPTKLNTLTKLPYSTCASHGPFTSSFSSTPNGEDEKTSPKSLRDSLLLEKFRLRKLKGSSTTSQGSPQASSCTPKKVTEEGLKNETEPTKVLTNFKELGLSEELIGVLESIGVFVPSETQCVGIPAVLEGKSVLLSSLSGPDRTLAYMLPLIQLLRQDAELSHSNLQYPRAIVLCASEEKAEQCFNAARYIVHHAKLKSAKEGSSPNNEQSNVSIGLIIGSPGEILQYIGERTVIPDEIRYLVLDEADCFFNSGLGPEMRKIIRPLQDYASKSTTIGLQSVLVTSTITEILGEESPIIKHLENNHAGKISAMLLELDPTEVFHLTESLDALRKKMTEAMDSLL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1172 358 SUPERFAMILY PABC (PABP) domain 303 355 IPR036053 GO:0003723
Dere06g1172 358 SMART poly_2 298 357 IPR002004 GO:0003723
Dere06g1172 358 Gene3D - 308 358 - -
Dere06g1172 358 MobiDBLite consensus disorder prediction 37 56 - -
Dere06g1172 358 MobiDBLite consensus disorder prediction 72 100 - -
Dere06g1172 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 305 IPR027417 -
Dere06g1172 358 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 320 IPR014001 -
Dere06g1172 358 Gene3D - 64 307 IPR027417 -
Dere06g1172 358 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 285 358 IPR002004 GO:0003723
Dere06g1172 358 Pfam DEAD/DEAH box helicase 135 303 IPR011545 GO:0003676|GO:0005524
Dere06g1172 358 Pfam Poly-adenylate binding protein, unique domain 304 355 IPR002004 GO:0003723
Dere06g1172 358 MobiDBLite consensus disorder prediction 72 92 - -
Dere06g1172 358 SMART ultradead3 127 325 IPR014001 -
Dere06g1172 358 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 43 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1172 Dere-ChrDere06 21975454 21978089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1172 101 281 Eukaryotic Initiation Factors Gene Family AT3G13920 25.946 2.80e-10 59.3