Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1169 ATGGCGGCGGTGATTTCAACACCTCTAGTTCAGCCCAATTGTTCTCCTGCGCCGCCGGTGGCCGTAGCAGCGGCAACGACATTGTCTGCTGGACCGTTCGCAAATATGTCGCTGTATGTGGGTGATCTTGACACGAATGTGAATGAGGGGCAGCTCTATGATCTGTTCTGCCAAGCGGGCACTGTTGCCTCCATCAGGGTTTGCAGGGATCAGACCAGGAGATCCTCTCTCGGTTACGCTTATGTCAACTTTGCCAGTGCTCAGGATGCGGCTAATGCCTTGAATGCTCTGAATTTTACCCCTCTTAATGGGAAACCCATTCGTATTATGTTCTCTCAACGAGATCCTAGCATTAGGAAAAGTGGATATGCTAATGTGTTCATTAAGAACCTGGACACATCAATAGATAACAAGGCATTACATGATACCTTTGTTGCCTTTGGGACTGTACTTTCCTGTAAGGTAGCTGTTGACAGCTTTGGTCAGTCAAGAGGTTATGGTTTTGTACAGTTTGACAATGAAGATGCTGCACAAAATGCCATCAAACAGTTGAATGGTATGTTGATAAATGATAAACAAGTCTATGTTGGACTCTTTGTTCGGCGCCAGGAAAGGGCTCGAGCAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAATTTTCCTGAAACATATTCTGATGAGGACCTTAAGCAGCTTTTTGGGCCTTACGGTACAATAACTAGTGCTGTTGTCATGAAAGATGCAAATGGGAAATCTCGATGTTTTGGGTTTGTTAATTTTCAAAGCCCAGATTCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACCACTGTCAATGATGATAAGGTGTTATATGTGGGGAGAGCTCAGAGGAAGGCAGAAAGAGAGGCAGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATTAGTCGATATGAGAAATTACAAGGTGCTAATCTATACTTGAAAAATCTTGATGACAGCATTAATGATGAAAAACTGAAGGAGTTATTTTTGGAGTTTGGAACAATTACATCATGCAAGGTCATGCTTGATTCACATGGGCATAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTACTCCCGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAGATGATTGGTCGAAAACCTCTTTATGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAGGCCCTGCAGGCTCATTTTGCTCAGATGCGATCACCTGGTGGAATTGCACCTCTGCCTTCTGGAATTCCTGGATATCATCCGGCGGCCCCTAGACTTGCCCCTCAACAGTTGTATTACGGTCAGGGTACACCTGGTCTTATACCACCTCAGCCAGCTGGATATGGTTTCCAGCAGCAACTCTTGCCAGGAATGCGTCCAGGTGTTGCTCCAAATTTCATTATGCCATACCAGCTTCAGAGACAGGGTCAGCCTGGGCAAAGGATGGGTGTCCGAAGGGGTGGAAATCTCCAACATGTGCAGCAGAATCAGATGCTGCATCGCAACTCCAATCAAGGGTTTAGATACATGGGCAACAATCGAAATGGCATGGACCCATCTGTAGTTCCTCATGGTCTAGTGAATCCAATGATGCCATTGCCCTTCGATGGTTCTGGGGTTAATTCTGCTCCCATCGATAATCAGCGACCTGGTGCATTGTCTACAACACTTGCCTCAGCTTTGGCTTCTGCTACACCAGAAAATCAGCGTATGATGCTGGGGGAACACCTATATCCCCTTGTAGAGCGTCTTGCACCAAACCATACAGCAAAAGTGACAGGGATGTTGCTAGAGATGGACCAATCCGAGGTTATCCATCTCATTGAATCTCCTGAAGAATTGAAGATAAAGGTGTCTGAGGCGATGCAAGTCCTACATGAAGCTGCATCGGGTTCTGAAGTTGGTGAACAGCTTGGCTCGCTGTCACTGAACGAATGA 1959 0.4579 MAAVISTPLVQPNCSPAPPVAVAAATTLSAGPFANMSLYVGDLDTNVNEGQLYDLFCQAGTVASIRVCRDQTRRSSLGYAYVNFASAQDAANALNALNFTPLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFVAFGTVLSCKVAVDSFGQSRGYGFVQFDNEDAAQNAIKQLNGMLINDKQVYVGLFVRRQERARANGSPKFTNVYVKNFPETYSDEDLKQLFGPYGTITSAVVMKDANGKSRCFGFVNFQSPDSAAAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKAKFEQERISRYEKLQGANLYLKNLDDSINDEKLKELFLEFGTITSCKVMLDSHGHSKGSGFVAFSTPEEASKALNEMNGKMIGRKPLYVAVAQRKEERKALQAHFAQMRSPGGIAPLPSGIPGYHPAAPRLAPQQLYYGQGTPGLIPPQPAGYGFQQQLLPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNLQHVQQNQMLHRNSNQGFRYMGNNRNGMDPSVVPHGLVNPMMPLPFDGSGVNSAPIDNQRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNHTAKVTGMLLEMDQSEVIHLIESPEELKIKVSEAMQVLHEAASGSEVGEQLGSLSLNE 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1169 652 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 37 632 IPR006515 GO:0003723
Dere06g1169 652 FunFam Polyadenylate-binding protein 125 198 - -
Dere06g1169 652 Coils Coil 288 316 - -
Dere06g1169 652 SMART rrm2_1 37 110 IPR003954 GO:0003676
Dere06g1169 652 SMART rrm2_1 125 197 IPR003954 GO:0003676
Dere06g1169 652 SMART rrm2_1 320 392 IPR003954 GO:0003676
Dere06g1169 652 SMART rrm2_1 216 288 IPR003954 GO:0003676
Dere06g1169 652 Pfam Poly-adenylate binding protein, unique domain 568 632 IPR002004 GO:0003723
Dere06g1169 652 Gene3D - 201 305 IPR012677 -
Dere06g1169 652 Gene3D - 306 410 IPR012677 -
Dere06g1169 652 CDD RRM3_I_PABPs 214 294 - -
Dere06g1169 652 Gene3D - 125 198 IPR012677 -
Dere06g1169 652 SUPERFAMILY RNA-binding domain, RBD 214 398 IPR035979 GO:0003676
Dere06g1169 652 SUPERFAMILY RNA-binding domain, RBD 36 204 IPR035979 GO:0003676
Dere06g1169 652 CDD RRM2_I_PABPs 122 197 IPR045305 -
Dere06g1169 652 PANTHER RNA BINDING PROTEIN 35 98 - -
Dere06g1169 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 560 637 IPR002004 GO:0003723
Dere06g1169 652 FunFam Polyadenylate-binding protein 29 124 - -
Dere06g1169 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Dere06g1169 652 Gene3D - 559 637 - -
Dere06g1169 652 SMART rrm1_1 125 197 IPR000504 GO:0003723
Dere06g1169 652 SMART rrm1_1 216 289 IPR000504 GO:0003723
Dere06g1169 652 SMART rrm1_1 37 110 IPR000504 GO:0003723
Dere06g1169 652 SMART rrm1_1 320 392 IPR000504 GO:0003723
Dere06g1169 652 FunFam Polyadenylate-binding protein 205 301 - -
Dere06g1169 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Dere06g1169 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Dere06g1169 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Dere06g1169 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 284 IPR000504 GO:0003723
Dere06g1169 652 SUPERFAMILY PABC (PABP) domain 509 636 IPR036053 GO:0003723
Dere06g1169 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
Dere06g1169 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Dere06g1169 652 Gene3D - 32 124 IPR012677 -
Dere06g1169 652 SMART poly_2 572 635 IPR002004 GO:0003723
Dere06g1169 652 CDD RRM4_I_PABPs 318 396 - -
Dere06g1169 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Dere06g1169 652 FunFam Polyadenylate-binding protein 302 406 - -
Dere06g1169 652 FunFam Polyadenylate-binding protein 556 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1169 Dere-ChrDere06 21957787 21961364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1169 35 641 Eukaryotic Initiation Factors Gene Family AT1G71770 59.677 0.0 719