Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1160 ATGGGTTTCGAATTGGACTCTGAGTGTTTCAGCAAAGTGATGGCTTCGATGCCGGGGTTTCGCTTCCATCCTACGGATGAGGAACTTGTCATGTATTATCTGAAGAGGAAGATGTCTAGGAGGAAGCTGAAGCTAGATGTAATTCGGGAGACCGACGTCTACAAGTGGGACCCTGAGGAATTGCCTGGGCAATCCGTGCTCAAAACTGGAGACAGGCAATGGTTCTTTTTCAGTCCTAGAGATAGGAAGTATCCTAATGCTGCGAGGTCTAATAGAGCAACAAGACATGGGTACTGGAAAGCTACGGGAAAAGATCGTAATGTGACATGCAATTCCCGGATGGTTGGAGTTAAAAAGACACTGGTCTTCTATAAAGGCAGAGCACCTAATGGTGAGCGAACTGACTGGGTTATGCATGAGTACACCATGGATGAAAAAGAGCTTCAAAGATGCCATGGTGTTAAGGACTATTTTGCACTCTACAAGCTGTACCAAAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTTAATGAAGAAGAGTGGGCAGATGATGATTTTGTCGATTTTAATATTAACTCAGCTGACTGTGAAGTTCCAACACAGCAACCTGATGATGTTACTTCTGGTGATACTGTCCCTGTTAATGGTCTAGTGCAGCCTTTGTATGATGATGATATTGAGAACATCGTGAGAAAACTTATGGATGATGAGTTTCTATTTGATCAGCAACATGTGAGCAGTCATCCTGCCTTACCTCAGGTTGTTGCTGAGGAGACACAGAGTGATCTGGTGGATCAGTTCTGTAGAGAAGTCATGTTACCTGAGCCAACCAAAGTGTTTCACCCTAGTGGTGTTCAGCAATGTGAAGTGGAGCCCAGTTCTGGCATCTCTCACGCAGCTATTTCTCACTTCCAAGTGTCTGAAGCTCCTGGGGTCACTTCTACTGCCAACAATAAAGAAGTGGAACTTGGCCGCTGTGGGGATGACTTCTTGGAACTAGATGATCTTATTGGTCCTGGACATGCATTGCCAAACTTTGATAAGCCTGAGGAGAACCTGCAGTTTGAAGATGGATTAAGTGAATTTGATCTGTACCATGATGCACAGATGTTTCTTCGTGACATGGGGCCGGTTGGGCAGGAATCTGTTTCACATCCTTATATGAACAGCCTGGATAGTGATATTGTAAATTGTAATTATGAGTTGCTATTCAATCAAGAGGATGCAAATCAAACTGGTGGTGAACTCTGGATGCGTGGTCAAAGAAACATCCTGAGTACAGCAGAGCACACTGATGGTTCTTTCTCTCTGCTAACATCAGGTGTCGTGTATGAATCTGCCAGCTTTCCTACTGAAAGCAATAAAACTCAAGCTAGCAACATGGGAGATGTTGCTGCAAGTAGATTATCTTCTTCCCTCTGGAATTTTGTTGAGTCGATACCATCTACTCCTGCATCAGCTTCTGAAAATGCTTTGGTGAATCAGACCTTTGGGCGAATGTCTAGCTTCGATAGATTAAAGATTGGTATCAAGAACACAAACGGTGCTGCAGGTAATGACATTGCAAGAATGAAGAGAGCAGGCAGAAAAGGAGTTTTCTTCCTTTTCTTTCCTGTTCTTGTTGCCTTGTGTGCTTTCTTGTGGTTTTCCGTAGGAACTTTATGA 1680 0.4375 MGFELDSECFSKVMASMPGFRFHPTDEELVMYYLKRKMSRRKLKLDVIRETDVYKWDPEELPGQSVLKTGDRQWFFFSPRDRKYPNAARSNRATRHGYWKATGKDRNVTCNSRMVGVKKTLVFYKGRAPNGERTDWVMHEYTMDEKELQRCHGVKDYFALYKLYQKSGPGPKNGEQYGAPFNEEEWADDDFVDFNINSADCEVPTQQPDDVTSGDTVPVNGLVQPLYDDDIENIVRKLMDDEFLFDQQHVSSHPALPQVVAEETQSDLVDQFCREVMLPEPTKVFHPSGVQQCEVEPSSGISHAAISHFQVSEAPGVTSTANNKEVELGRCGDDFLELDDLIGPGHALPNFDKPEENLQFEDGLSEFDLYHDAQMFLRDMGPVGQESVSHPYMNSLDSDIVNCNYELLFNQEDANQTGGELWMRGQRNILSTAEHTDGSFSLLTSGVVYESASFPTESNKTQASNMGDVAASRLSSSLWNFVESIPSTPASASENALVNQTFGRMSSFDRLKIGIKNTNGAAGNDIARMKRAGRKGVFFLFFPVLVALCAFLWFSVGTL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1160 559 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Dere06g1160 559 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 248 - -
Dere06g1160 559 FunFam Nac domain-containing protein 86 25 169 - -
Dere06g1160 559 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Dere06g1160 559 SUPERFAMILY NAC domain 14 166 IPR036093 GO:0003677|GO:0006355
Dere06g1160 559 Gene3D NAC domain 25 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1160 Dere-ChrDere06 21853138 21856689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1160 9 559 NAC Transcription Factor Family AT1G34190 43.782 2.94e-133 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere06g1160 NAM 3.9e-37 No_clan