Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1144 ATGGATCCAAAAGAGAACCTTTGTGCTAACACATGGGCAAAGTCCTCTTCGTTAAACTCTTCAAGGAATGGATTGCCTGTTAATTTGTCCACAGATTCTCCCTCATTTCCTGATCTCAGTTTGCAGCATAATCAACCAAAATGGGGTGTTCCCTCTATTTCAGATTATGGTATCAGGACTGACTCACCTTTCAAAGAATTCAACCAGACCTCTCGGGGCCTGCCTTTCCTTCCAAATGACTCCAACAATAAGATTAAGATTCCTGATCAAGAAAATTGTCAGACGAGTGATGCATCGCAGAATGATAAACTGGAAAATTGGGACCCCAACGCAACATTGAATAATCTTTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGTTGGTCGGAAAGGCCAATGTTTTGGACAACCTGATGAAATTGTTGTCCAGGAACAACAGCTCATCACAGCTGATCTTACATCAATTATTGTTCAGTTGATATCTACTGCAGGTAGTCTTCTCCCTTCTGTGAGGCATAGCCTTACAAACAATAGTCTATCGGTTGGACAGCTTAGTCAGCTAGAGGAGATTACTATTTCTTCTGGATCTGGCGGCCCAAGTAGTAGAATTCATCCACAAAATAATAGTGCAAATAAAATGTCTGATCACTCCACTCAGATTGATGTACCCAATAGCTGTGAGATGGAGCAAAACTACAATGTGGAAGAGCATGAATCCAAAGATGAAGAAGACATGGAAGAGGGAGAGAACCTTCCACCTGGTTCCTATGAGATTTTACAGTTAGAAAAAGAAGAAATCCTTGCACCCCATACACACTTCTGTACAATTTGTGGGAAGGGATTTAAGCGAGATGCAAATCTTCGGATGCACATGCGTGGTCATGGTGATGAGTACAAAACCCCAGCAGCACTGGCAAAGCCTCATAAAGAATCTGGGTCTGAACCAAAACTTATCAAAAGATATTCCTGCCCCTATGCTGGCTGCAAGCGTAACAAGGATCACAAAAAGTTTCAACCTCTGAAGACTATTTTGTGTGTCAAAAACCATTACAAAAGAACACACTGTGACAAGAGTTACATTTGCAGCAGGTGCCACACCAAGAAATTTTCAGTCATGGCTGATCTGAAAACTCATGAAAAGCATTGTGGAAAGGACAAATGGCTCTGTTCGTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTGTTCCAAGGCCATACACCAGCCATTCCCCTAGATGATGCTAAAGCGCCAGCTAGGCCATCTAATCTCGAAAGCAAAGAAAACAATAGTAGTAATGTAGAAGGTATAAACATCAGCTTTGGATCAAATCCTTCCAGTGAAAATGGAGTTCAAAGCATGATGGATGTGAAAGGTGATATTGACGATCCTATCAATTATTTATCTTCTTTGAACTTCGATACCTGTAACTTTGGTGGGTTCAATGAATTCACTCGCCCTCCATTTGAAGACTCAGAAGGTTCATTCTCCTTTCTCATGCCCGGTTCTTACAGTTATGCTCAAAAGACCGGAGAAGAAGCTAGTTCTGACAATCTGTAA 1596 0.4148 MDPKENLCANTWAKSSSLNSSRNGLPVNLSTDSPSFPDLSLQHNQPKWGVPSISDYGIRTDSPFKEFNQTSRGLPFLPNDSNNKIKIPDQENCQTSDASQNDKLENWDPNATLNNLSFLEEKIHQLQDLVHLIVGRKGQCFGQPDEIVVQEQQLITADLTSIIVQLISTAGSLLPSVRHSLTNNSLSVGQLSQLEEITISSGSGGPSSRIHPQNNSANKMSDHSTQIDVPNSCEMEQNYNVEEHESKDEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDAKAPARPSNLESKENNSSNVEGINISFGSNPSSENGVQSMMDVKGDIDDPINYLSSLNFDTCNFGGFNEFTRPPFEDSEGSFSFLMPGSYSYAQKTGEEASSDNL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1144 531 MobiDBLite consensus disorder prediction 1 31 - -
Dere06g1144 531 ProSitePatterns Zinc finger C2H2 type domain signature. 281 301 IPR013087 -
Dere06g1144 531 Gene3D Classic Zinc Finger 263 333 - -
Dere06g1144 531 SMART c2h2final6 279 301 IPR013087 -
Dere06g1144 531 SMART c2h2final6 328 361 IPR013087 -
Dere06g1144 531 SMART c2h2final6 366 388 IPR013087 -
Dere06g1144 531 MobiDBLite consensus disorder prediction 425 448 - -
Dere06g1144 531 MobiDBLite consensus disorder prediction 9 31 - -
Dere06g1144 531 SUPERFAMILY beta-beta-alpha zinc fingers 277 304 IPR036236 -
Dere06g1144 531 MobiDBLite consensus disorder prediction 198 225 - -
Dere06g1144 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 306 IPR013087 -
Dere06g1144 531 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 90 503 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1144 Dere-ChrDere06 21563481 21565076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1144 247 529 C2H2 Transcription Factor Family AT1G34370 70.139 5.63e-143 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g1144 None None None