Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1116 ATGATTAACTCTTTGATAAGGACAGCTTGGAAGTCTGACAAAGCATCCACATGGCAAAAAGAATCATTCACATCTCTCTCTGTCTCTCTGTGTAAACTCTTCCTCTCTTTCAGTGCCTCAGCAAGGCTCAAGAAGAAGATCATGACAGCAACCCAGTTTTCTGTTAAGAGTCTTGCGCGAAGTAACCACGTCCTTTTAATTTCTGAAATTTCATTGGCTGCCCATGAGGAGAGATCATCAATGGAGTTGGAATCCTGTGTTCCTCCAGGATTTCGATTTCATCCCACAGAGGAAGAACTCGTAGGGTACTACCTCAAGAGGAAGATAAACTCGTTAAAAATCGATCTAGATGTTATTGTTGAGATCGATCTCTACAAAATTGAACCCTGGGACATTCAAGGTACTATAGAAGAAGGATGGGTGGTATGTCGAGCATTCAAAAAGCCTAGTCCTACACAGGAGAGGCAAGGCTTCGAACGTTGGAGTAGTCATCATCATCATCATCAAGCTCACTATTTCAGAGACCAAATAAGCTATGGCTATGCAAGGCCTCTCTCTCACTCATCATTTACAGACACATTGAATCCTAACGAAACCCTAAAGCATGTGCTTTATCCCAGCAATGAAGGTACAAGTTTTAGCCATCACCAGCAGTTTCTGTCAAACGACACCGTTTTCGACAACAACAACCATCAGCTTGTTGAGCTTATTCCTCATCTAGATAGCCCCACAGCTTCTGTATCAGCAGCTCCAATGGCAGTAAAAGAAAATGGCTTCACAAATGAAGATAATAATTACGTTCAAGAAAGGTGCAGTAACAACAACATTAACGATGGCCAATGCATAGATTGGAAGGCCTTGGACAACTTGTTTGCTTCACAGTTCAGTGATGATACTTCTGCTTATTTTCCTCATCCGAACATGCCCTTGATCCCACATAGTCATGCATGA 951 0.4217 MINSLIRTAWKSDKASTWQKESFTSLSVSLCKLFLSFSASARLKKKIMTATQFSVKSLARSNHVLLISEISLAAHEERSSMELESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKIEPWDIQGTIEEGWVVCRAFKKPSPTQERQGFERWSSHHHHHQAHYFRDQISYGYARPLSHSSFTDTLNPNETLKHVLYPSNEGTSFSHHQQFLSNDTVFDNNNHQLVELIPHLDSPTASVSAAPMAVKENGFTNEDNNYVQERCSNNNINDGQCIDWKALDNLFASQFSDDTSAYFPHPNMPLIPHSHA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1116 316 ProSiteProfiles NAC domain profile. 87 239 IPR003441 GO:0003677|GO:0006355
Dere06g1116 316 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 86 133 - -
Dere06g1116 316 SUPERFAMILY NAC domain 83 136 IPR036093 GO:0003677|GO:0006355
Dere06g1116 316 Pfam No apical meristem (NAM) protein 88 170 IPR003441 GO:0003677|GO:0006355
Dere06g1116 316 Gene3D NAC domain 96 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1116 Dere-ChrDere06 20735138 20741635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1116 103 315 NAC Transcription Factor Family AT1G71930 29.130 6.42e-14 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere06g1116 NAM 2.7e-13 No_clan