Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1114 ATGGAGAAAACTAAAGGCATGTCGGTCTTGCCTTACGAAACCCCAAGACTCAGAGACCATTACCTTGTGGGGAAGAAGCTAGGGCAGGGCCAATTTGGGACCACGTACCTCTGTACCCACAAGATATCAGGGGAGCACTACGCCTGCAAATCCATTCCAAAGCGGAAGCTTTTGTGCAAAGAAGATTACGAAGACGTGTGGAGAGAGATTCAGATCATGCATCATCTGTCGGAGCATCCAAATGTGGTTCGGATACAAGGGACGTACGAGGACTCTGTGTTTGTACACCTGGTTATGGAGCTGTGTGCCGGGGGTGAGCTCTTTGATAGGATTATTCAGAAGGGGCATTATAGTGAGAGAGAGGCGGTCAAGTTGATAAAGACCATTGTTGGTGTGGTCGAAGCTTGTCATTCCCTTGGGGTTATGCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATAGTGTGGGTGAAGATGCCCAGATGAAGGCCACAGATTTTGGCCTCTCCGTATTTTACAGGCCAGGACAAGCCTTTAGTGATGTAGTTGGAAGCCCCTACTATGTTGCCCCTGAGATTTTGTGCAAGCATTATGGACCAGAAGTTGATGTGTGGAGTGCTGGAGTTATCCTTTACATCTTGTTGAGTGGGGTCCCACCTTTTTGGGCGGAAACTGAACCAGGCATTTTCAGACAGATTTTACAAGGAAAGCTAGATTTTAATTCTGATCCATGGCCAAGCATATCAGAAAGTGCTAAAGATTTGGTGAATCAAATGCTTGAGAAGGACCCTAAGAAAAGAATTTCTGCTCATGAAGTCTTATGTCACCCTTGGATAAACGATGATGAAGTTGCCCCTGACAAACCTCTGGATTCTGCAGTTTTGTCACGCTTGAAACATTTCTCAGCTATGAATAAAGTAAAAAAGATGGCCCTGCGGGTCATAGCAGAAAGGCTTTCAGAGGAAGAAATTGGCGGTTTAAAAGAGTTGTTCAAAATGATTGACACAGACAACAGTGGGACAATAACATTCGAAGAACTCAAAGAAGGTCTGAGAAGAGTTGGTTCTGACCTAATGGAATCTGAAATTAAATCGCTCATGGAAGCGGCTGACATAGACAATAGTGGAACAATAGACTATGGTGAATTTCTTGCTGCTACACTGCACATGAATAAGATGGAAAGAGAGGAGAATTTAGCTGCAGCCTTTTCCTATTTTGATAAAGATGGTAGTGGTTACATCACTCTTGATGAGCTTCAACAGGCATGTACGGAGTTCGGCTTAGGTGACGTAAATCTAGATGATATGACAGAGATTGATCTAGACAATGATGGGAAAATTGATTATGGGGAATTTGTAGCAATGATGAAAAAGGGCGATGGAGGTGTTGGTAGGAGCAGAACCATGAAAGGCAATTTGAACTTCAATATAGCAGATGCCTTCCAAGTAAATGAGTCATCCTGA 1464 0.4372 MEKTKGMSVLPYETPRLRDHYLVGKKLGQGQFGTTYLCTHKISGEHYACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHPNVVRIQGTYEDSVFVHLVMELCAGGELFDRIIQKGHYSEREAVKLIKTIVGVVEACHSLGVMHRDLKPENFLFDSVGEDAQMKATDFGLSVFYRPGQAFSDVVGSPYYVAPEILCKHYGPEVDVWSAGVILYILLSGVPPFWAETEPGIFRQILQGKLDFNSDPWPSISESAKDLVNQMLEKDPKKRISAHEVLCHPWINDDEVAPDKPLDSAVLSRLKHFSAMNKVKKMALRVIAERLSEEEIGGLKELFKMIDTDNSGTITFEELKEGLRRVGSDLMESEIKSLMEAADIDNSGTIDYGEFLAATLHMNKMEREENLAAAFSYFDKDGSGYITLDELQQACTEFGLGDVNLDDMTEIDLDNDGKIDYGEFVAMMKKGDGGVGRSRTMKGNLNFNIADAFQVNESS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1114 487 Gene3D - 291 459 - -
Dere06g1114 487 FunFam Calcium-dependent protein kinase SK5 189 284 - -
Dere06g1114 487 CDD STKc_CAMK 20 278 - -
Dere06g1114 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Dere06g1114 487 FunFam CDPK-related kinase 3 13 181 - -
Dere06g1114 487 CDD EFh 327 386 IPR002048 GO:0005509
Dere06g1114 487 Gene3D Phosphorylase Kinase; domain 1 22 106 - -
Dere06g1114 487 ProSitePatterns EF-hand calcium-binding domain. 371 383 IPR018247 -
Dere06g1114 487 PANTHER SERINE/THREONINE-PROTEIN KINASE 17 452 - -
Dere06g1114 487 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Dere06g1114 487 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1114 487 FunFam Calcium-dependent protein kinase 1 287 460 - -
Dere06g1114 487 ProSiteProfiles Protein kinase domain profile. 21 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1114 487 ProSitePatterns EF-hand calcium-binding domain. 335 347 IPR018247 -
Dere06g1114 487 SMART efh_1 362 390 IPR002048 GO:0005509
Dere06g1114 487 SMART efh_1 326 354 IPR002048 GO:0005509
Dere06g1114 487 SMART efh_1 431 459 IPR002048 GO:0005509
Dere06g1114 487 SMART efh_1 398 426 IPR002048 GO:0005509
Dere06g1114 487 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Dere06g1114 487 SMART serkin_6 21 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1114 487 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Dere06g1114 487 SUPERFAMILY Protein kinase-like (PK-like) 17 289 IPR011009 -
Dere06g1114 487 FunFam Calcium-dependent protein kinase 1 23 106 - -
Dere06g1114 487 Gene3D Transferase(Phosphotransferase) domain 1 107 290 - -
Dere06g1114 487 ProSiteProfiles EF-hand calcium-binding domain profile. 322 357 IPR002048 GO:0005509
Dere06g1114 487 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Dere06g1114 487 Pfam EF-hand domain pair 327 387 IPR002048 GO:0005509
Dere06g1114 487 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Dere06g1114 487 ProSiteProfiles EF-hand calcium-binding domain profile. 438 462 IPR002048 GO:0005509
Dere06g1114 487 SUPERFAMILY EF-hand 308 459 IPR011992 -
Dere06g1114 487 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1114 Dere-ChrDere06 20705923 20711120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1114 8 484 EF-hand Containing Proteins AT1G35670 85.146 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere06g1114 Pkinase 4.2e-76 CL0016