Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1107 ATGTGCACACTTCCATTTGTTCCTTTGCATCAATATGGCTTTGCTTGTACTATAGTACTGTTTTCAAAGGTTGCTTTTATTCAATTCAAAGATATAGACTTGCCTATTTTACCATTCCATTGTGTACATGCGGCAAAGGTGGTGCTGATTGGGAGCCATGTAAATCTGTCTTTCGATGACATTGAAGCTATTTTCGCCCCCAAAATCAAGGGTTCAGGAGAATCTGGGGTCTTATATTTGGCAGAGCCACTTGATGCTTGTAGAGCACTGACAAATAGAGCTGAACAACTTTCAAATGTGAGTGCCCCTTTTGTTTTGATAGTTAGAGGACGATGTAGCTTTGAGGAAAAGGTCACGAGAGCACAAAAGGCTGGCTTCAAAGCTGCAATTGTCTATGATAATGAAGATGGTTTCTTAGTTGCAAGTAATGACCAATTCTTGCATTTAGCATCGGCATTGTTTGACATACTTTTCAATATGCAAGTGCCTTTAAGCTTAAGCTTCATCATTAATAATCTGAATTCTAATGTACGTTGCTTGGCTGTGTGA 549 0.3916 MCTLPFVPLHQYGFACTIVLFSKVAFIQFKDIDLPILPFHCVHAAKVVLIGSHVNLSFDDIEAIFAPKIKGSGESGVLYLAEPLDACRALTNRAEQLSNVSAPFVLIVRGRCSFEEKVTRAQKAGFKAAIVYDNEDGFLVASNDQFLHLASALFDILFNMQVPLSLSFIINNLNSNVRCLAV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1107 182 SUPERFAMILY PA domain 100 141 IPR046450 -
Dere06g1107 182 Gene3D - 45 160 - -
Dere06g1107 182 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 45 153 - -
Dere06g1107 182 CDD PA_C_RZF_like 44 145 IPR044744 -
Dere06g1107 182 Pfam PA domain 84 141 IPR003137 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1107 Dere-ChrDere06 20569859 20572489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1107 40 141 C3H Transcription Factor Family AT1G22670 53.398 1.67e-28 107