Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1087 ATGGAATACCAGGTGAAAGCCACGCCTTCTCCTCCCTCTTCTCCGCCGCCCTCGGTGATTGTGAGCCCCTGCGCAGCCTGCAAGATCCTGCGGCGGCGGTGCGTGGACAAGTGTGTATTGGCTCCCTATTTCCCTCCCAGTGATCCCCTCAAGTTCACCATTGCTCACAGGGTCTTCGGCGCCAGCAACATCATCAAGTTCTTGCAGGAAGTACCGGAGTGTCAGAGAGCAGACGCAGTGAGCAGCATGGTGTACGAGGCACATGCCCGGATGAGAGACCCAGTGTACGGGTGTGCAGGGGCAATATGCCATCTCCAGAAGCAAGTGAGGGAGCTTCAGACCCAGCTGGCCAAAGCCCAAGCTGATCTCCTCAACATGCAATCCCAACACTCTGATTTGCTTTCCCTAACATACATGCGAATGTCCCAATACTCTCCTCCACGCCCACCACCACCACCACAACACCTTGATGTCACGTGCTTCTCAGATGAACTCTCCTTCGCCTCCTCTTGGGAGCCTCTCTGGGCATGA 531 0.5631 MEYQVKATPSPPSSPPPSVIVSPCAACKILRRRCVDKCVLAPYFPPSDPLKFTIAHRVFGASNIIKFLQEVPECQRADAVSSMVYEAHARMRDPVYGCAGAICHLQKQVRELQTQLAKAQADLLNMQSQHSDLLSLTYMRMSQYSPPRPPPPPQHLDVTCFSDELSFASSWEPLWA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1087 176 Coils Coil 109 129 - -
Dere06g1087 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 22 132 - -
Dere06g1087 176 Pfam Lateral organ boundaries (LOB) domain 23 120 IPR004883 -
Dere06g1087 176 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1087 Dere-ChrDere06 20271970 20273427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1087 19 175 AS2 family AT1G07900 64.375 3.73e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere06g1087 LOB 3e-40 No_clan