Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1070 ATGAATATGTTTTCGCTGATGGAATCAACGAGGAGGAGCTCAGAAAGGTGCTTAGATTCTCAATTGTGGCACGCCTGTGCTGGTCCTGTGGTTCAAATGCCACCAGTAAATTCCAAAGTCTTCTACTTCCCTCAGGGTCACGCAGAGCACGCAACTGGGAAAGTTGATTTTGGAAGATATTTTATTCCCTCTCTCATTGCCTGTGAGATCTCTGCTATAAAATACATGGCAGACCCTGACACAGATGAGGTGTTCGTGAAAATGGGGTTGACCCCTCTGATGAGAGAGAAAAAATTGGAGTTTGAAGATGATTATTTCAATGTTCTTGAGAGCCAAGGGAAAACCTCTTCGTTTGCCAAGACATTGACACAATCTGATGCGAATAATGGTGGAGGCTTCTCTGTGCCTCGTTACTGTGCAGAGACTATATTCCCAAGGTTGGATTATTCTGCTGAACCTCCGGTTCAAACCATTATTGCCAAGGATGTGCATGGACGGAGCTGGAAATTTAGGCATATCTATAGAGGCACGCCTCGCCGGCATCTTTTAACAACAGGTTGGAGCAGTTTTGTGAACCAAAAGAATCTTGTTGCTGGGGATTCTGTTATATTCCTTAGAGCAGATAATGGGGATCTTTGTATTGGAATAAAAAGGAAGTGGATTGGTGGTGGTACTGAGTACTCTTCTAATTGGAATCAATCAGCACTGTGTCCTTCGGGCTTTTTGAGTAAGCATGAGAACAACACATTGATGATGAGGATGAGACAAGGTGATGAGGAATTGAAGGGGAGAGTGCCAGCTGAATCTGTTGTTGAAGCTGTGACTTCTGCTATCAACAATCAGCCCTTTGAGGTTGTCTACTACCCGCGTGCTGGCACGCCGGAGTTTTGCGTCAAAGCATCGGCTGTGAAGGCTGCCATGCAAATTATGTGGTGTTCTGGGATGAGATTCAAAATGCCTTTTGAGTCAGAGGATTCATCTAGGATTAGCTGGTTCATGGGGACAATATCTTCTGTTCAAGTCGCAGATCCATTTCGTTGGCCCAATTCTCCATGGCGCCTTTTGCTGGTGGAATGGGATGAACCCGATTTACTTCAAAATGTCAAGTGTGTAAACCCCTGGATGGTTGAACTAGTCGCCTACACGTCATCCTTCCATCTCGATCCATACTCACCACCAGGAAAGAAATTACGGTTTCTGCATCATCCCGATTTGCCCCTTGTCAACCAACATCTGATGCCATCATTCTCCAGCTATCTTCTTAATCATTCTTACTTCCTATGTAATATTCAAACCAATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCCCAATTTGGACTATCTCCATCTGAGTTTCCTTTCAACAAGCTGCACTCTGATATGCTTCCCGGTGGATTACGACGGCCCAACCATGCTGTCCAGCTGGTGAGAACTCCTTGTAGCACCTGTAAGAGCAGCAAGGAGAACAATGGCATTATTTCTAGCTTTTTGACAATGGGATATCCTGGCCAGAGTTTGGAAAAACCTATAGAAGCCAAATCCCCACACATCCTGTTGTTTGGTCAACTCATACATACCGAACAGCTGACTTCATACAGTTGCTCTACTAGTACAAATGAAAACAGTTTATCGGAAGAGAACTCACTCAAGACATCAAAGGCTTTTGATGGCTTAGCTTCTTCTTTGCATCAAAATAGTCCAATAGAAAATTCCTCTGATGGGGGTTCTCCCTGGTACAAAGATCAGCACAAATCCGATCTGGGAACCGACAATATTAACCTCTTATGTTTGGCATTATGA 1803 0.4443 MNMFSLMESTRRSSERCLDSQLWHACAGPVVQMPPVNSKVFYFPQGHAEHATGKVDFGRYFIPSLIACEISAIKYMADPDTDEVFVKMGLTPLMREKKLEFEDDYFNVLESQGKTSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGRSWKFRHIYRGTPRRHLLTTGWSSFVNQKNLVAGDSVIFLRADNGDLCIGIKRKWIGGGTEYSSNWNQSALCPSGFLSKHENNTLMMRMRQGDEELKGRVPAESVVEAVTSAINNQPFEVVYYPRAGTPEFCVKASAVKAAMQIMWCSGMRFKMPFESEDSSRISWFMGTISSVQVADPFRWPNSPWRLLLVEWDEPDLLQNVKCVNPWMVELVAYTSSFHLDPYSPPGKKLRFLHHPDLPLVNQHLMPSFSSYLLNHSYFLCNIQTNSSAGIQGARHAQFGLSPSEFPFNKLHSDMLPGGLRRPNHAVQLVRTPCSTCKSSKENNGIISSFLTMGYPGQSLEKPIEAKSPHILLFGQLIHTEQLTSYSCSTSTNENSLSEENSLKTSKAFDGLASSLHQNSPIENSSDGGSPWYKDQHKSDLGTDNINLLCLAL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1070 600 FunFam Auxin response factor 311 384 - -
Dere06g1070 600 CDD B3_DNA 117 218 IPR003340 GO:0003677
Dere06g1070 600 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 551 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dere06g1070 600 Pfam Auxin response factor 273 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dere06g1070 600 FunFam Auxin response factor 116 220 - -
Dere06g1070 600 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Dere06g1070 600 MobiDBLite consensus disorder prediction 563 579 - -
Dere06g1070 600 MobiDBLite consensus disorder prediction 563 584 - -
Dere06g1070 600 SMART B3_2 118 220 IPR003340 GO:0003677
Dere06g1070 600 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Dere06g1070 600 SUPERFAMILY DNA-binding pseudobarrel domain 110 225 IPR015300 -
Dere06g1070 600 Gene3D - 115 219 IPR015300 -
Dere06g1070 600 Gene3D - 311 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1070 Dere-ChrDere06 19891005 19893253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1070 3 586 B3 DNA Binding Superfamily AT4G30080 53.589 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dere06g1070 B3 7.2e-22 CL0405