Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1019 ATGCTAAAAGTTGAATGGCAAGACAGGTATAAGGGAAGAATGGAAGCAGAATTTCAGAGACCTAAAGCCTTCAATGCGCGTCATCTGAGTTCGATAAGGGAAGAACGCCAAAGTCAATCGGAGAGCCGAATTATCCCGCGCGTGGATGACGTAGCGGAAAAAGGCTCACACCGGAGGCGTTCTTCACTGTTGTACAATACGAAAATGTGTTATTTCACCAATAAATCAGGCTGTTCTCGTTCATCTACTTCACATCATCTCGCGCAAACTCTGTTTTACGGAGAATTCCGAGTAGATCCAACAATGGAGACTTCTTCTATTGTAGCATCGCTCAGGGAGTTGAAGTTGGAGGATGATAAAGCTAAAGATGAACAATGCAGTATTTGCCTGGAGAACTATGAAGATGACAGTAATGTTTTGTCGATGCCCTGTGATCATATCTTTCATAACAAATGCATTGCACGGTGGCTCCGAACAAGGCGTACGTGCCCATTGTGTCGCTTCCAAATGCCCGAGGAATGA 522 0.4464 MLKVEWQDRYKGRMEAEFQRPKAFNARHLSSIREERQSQSESRIIPRVDDVAEKGSHRRRSSLLYNTKMCYFTNKSGCSRSSTSHHLAQTLFYGEFRVDPTMETSSIVASLRELKLEDDKAKDEQCSICLENYEDDSNVLSMPCDHIFHNKCIARWLRTRRTCPLCRFQMPEE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1019 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 172 IPR013083 -
Dere06g1019 173 SMART ring_2 126 166 IPR001841 -
Dere06g1019 173 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
Dere06g1019 173 SUPERFAMILY RING/U-box 117 171 - -
Dere06g1019 173 SMART ringv_2 125 167 IPR011016 GO:0008270
Dere06g1019 173 CDD RING-H2_PA-TM-RING 125 167 - -
Dere06g1019 173 PANTHER TARGET OF ERK KINASE MPK-1 86 171 - -
Dere06g1019 173 Pfam Ring finger domain 125 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1019 Dere-ChrDere06 19001059 19005390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1019 122 170 C3H Transcription Factor Family AT1G68070 48.980 1.06e-14 68.6