Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1017 ATGCCACGGTGCAGACGCGGGTATGTACACGTGGTGAATAATGATTTCACGCAGTGGGAGATGTACGCTATCGGTGGTAGTGCCAACCCCACCATAAACAGCCAGGGTAACCGTTATACTGCTCCCTCTAATCCTAATGCTAAAGAGGTTACGAAGCGCGTGGACACAGACGAGAGAGAATGGGCAGGTTGGAATTGGAGGACAGATGGCGACTTAATGGTGAACGGAGCGTACTTCGTGGCATCAGGTGATTGGCTCAGCACAGAGTTCGCCAAGGCCTCCAGTGTACCTCCCCGATCTGCCATTCAGATAGACCAGCTCACTCTCAATGCTGGCGTCTTCAATGATCCAAGGGAAAATGGGGATTTATTTCCTAGATTCATGGGCGGCGGTGGGACTGCAGCCGCCACCGGCACCACCGGCAAAGGCAATGCAGGTTTCAGAGCCGGCGGCAACGGTGGAGTAATTAATATGAATAAAGGTGGTCAATTTTATAATAATCAATTAACTATACAAAAAGCAAAACCTTATGCAATATCCAACACAAGAATGTATTTTCATTTAGCCAAATACATTAGATACAGAGAAGGATGA 594 0.4798 MPRCRRGYVHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSNPNAKEVTKRVDTDEREWAGWNWRTDGDLMVNGAYFVASGDWLSTEFAKASSVPPRSAIQIDQLTLNAGVFNDPRENGDLFPRFMGGGGTAAATGTTGKGNAGFRAGGNGGVINMNKGGQFYNNQLTIQKAKPYAISNTRMYFHLAKYIRYREG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1017 197 PANTHER PECTATE LYASE 18-RELATED 1 115 IPR045032 GO:0030570
Dere06g1017 197 PRINTS Pollen allergen Amb family signature 93 116 IPR018082 -
Dere06g1017 197 PRINTS Pollen allergen Amb family signature 22 41 IPR018082 -
Dere06g1017 197 PRINTS Pollen allergen Amb family signature 64 88 IPR018082 -
Dere06g1017 197 SUPERFAMILY Pectin lyase-like 1 113 IPR011050 -
Dere06g1017 197 Gene3D - 1 115 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1017 Dere-ChrDere06 18989721 18994503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1017 1 120 Polysaccharide Lyase AT3G54920 71.901 5.28e-59 191