Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1006 ATGGCCCATTGCCTGATCCTTCTGGCTCGAGGCCAGTCCTGGGAGTCCCCGAAACTGTTCGAGGAAGACGATGATGATACGAATAATGATGGGTTTTTGAATTACAGCAAGTACAGCAGCAGAAAATTCATGGAAGCTGTTACAATGGGGTATGAATGCAAGACTTGTAACAGAACGTTCCCGTCGTTTCAAGCACTGGGAGGTCACAGAGCGAGCCACAAGAAGACCAAGGCAGCTTCGGGAGCTTCAATAATGGCGTTTGATGATGAAGAGTTTCAATTGAAGAACAAGAACCTGTTTTATCTTAAATTGAGTAACAATAATAACAGCAAAGGGAATAATTTGTATAGCAGCAATAAGAACAAGTCCAAGGTTCACGAGTGCTCTGTTTGTGGTGCGGAGTTTACGTCAGGGCAAGCTCTGGGTGGCCACATGAGACGACATCGTGGACCTGTCGGAACCACCAATACGACGTTGTCGTTGACTCCAATGGCTGCTGTGGAAGCCGATGAGTATCAGCCTAAGAAGCGGAGGAAATTAGTGTCGTCGCCGTTGGATTTGGATCTCAATCTTCCTGCCCCAGAAGATGATCAACGAGAACCCAAGTTTGCGTTCGGATCCAATCAACGACAACAACCTAATCTCGTTCTCTCTGCTCCTTCCTTGGTCGATTGCCATTACTGA 684 0.4693 MAHCLILLARGQSWESPKLFEEDDDDTNNDGFLNYSKYSSRKFMEAVTMGYECKTCNRTFPSFQALGGHRASHKKTKAASGASIMAFDDEEFQLKNKNLFYLKLSNNNNSKGNNLYSSNKNKSKVHECSVCGAEFTSGQALGGHMRRHRGPVGTTNTTLSLTPMAAVEADEYQPKKRRKLVSSPLDLDLNLPAPEDDQREPKFAFGSNQRQQPNLVLSAPSLVDCHY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1006 227 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Dere06g1006 227 PANTHER ZINC FINGER PROTEIN ZAT5 1 210 - -
Dere06g1006 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Dere06g1006 227 MobiDBLite consensus disorder prediction 186 211 - -
Dere06g1006 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Dere06g1006 227 SUPERFAMILY beta-beta-alpha zinc fingers 51 148 IPR036236 -
Dere06g1006 227 Pfam C2H2-type zinc finger 125 150 - -
Dere06g1006 227 Pfam C2H2-type zinc finger 51 75 - -
Dere06g1006 227 SMART c2h2final6 126 148 IPR013087 -
Dere06g1006 227 SMART c2h2final6 51 73 IPR013087 -
Dere06g1006 227 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Dere06g1006 227 Gene3D Classic Zinc Finger 48 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1006 Dere-ChrDere06 18881349 18882032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1006 1 227 C2H2 Transcription Factor Family AT5G04390 43.704 5.78e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g1006 zf-C2H2_6 4.8e-13 CL0361