Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1005 ATGCCACTTTCCAATCACAAGCCCAAGCCCATTATGATTGTTAATCAATTCATAAACCAAAGAAAGAAGTTTCCATCCATGAAGTCCTTGGGTGGCCACTTGAGGTCTCACCATAGAAGGGAACAGAAGGAAACTCAACCCCACACTACTCCGTCGTCTCTCGTTGATCACTTGCGATCTTTATCACCCTCATGGTCGTCTTTCAACGGAAAGAGAGGTCGCCCGGGCAAAAGCGTCACTGTTTTCGAACCCTATATAGATGAATACGCTTTTGACCTCATGATGCTCGTGTATGGAAATAGTAATGTCCATGAATTTTTCAACCCTAAGAGGCCAAGAAAGGTCAAAACTGCTAAACCTAATGGTGAAGATGATCATGATGATGTGAACGTGAAAGTGATAGGAAGTAGAATCGGCAATGGGCATCAGTGTAATATTTGCCAGAAGACATTCTCAACTGGTCAAGCTCTTGGAGGCCACATGAGATTTCATTGGACACCTAATAATGCAGAAGCAAAGTATTCGAATGAAACCACTCCTGCTCCTCAGCCCATTGGTGTGCATGACGCAGTCCACTCATCACCTCTATGA 591 0.4416 MPLSNHKPKPIMIVNQFINQRKKFPSMKSLGGHLRSHHRREQKETQPHTTPSSLVDHLRSLSPSWSSFNGKRGRPGKSVTVFEPYIDEYAFDLMMLVYGNSNVHEFFNPKRPRKVKTAKPNGEDDHDDVNVKVIGSRIGNGHQCNICQKTFSTGQALGGHMRFHWTPNNAEAKYSNETTPAPQPIGVHDAVHSSPL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1005 196 Gene3D Classic Zinc Finger 133 183 - -
Dere06g1005 196 MobiDBLite consensus disorder prediction 176 196 - -
Dere06g1005 196 SUPERFAMILY beta-beta-alpha zinc fingers 141 167 IPR036236 -
Dere06g1005 196 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 22 180 IPR044653 GO:0003700
Dere06g1005 196 Pfam C2H2-type zinc finger 22 39 - -
Dere06g1005 196 Pfam C2H2-type zinc finger 142 166 - -
Dere06g1005 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
Dere06g1005 196 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Dere06g1005 196 MobiDBLite consensus disorder prediction 27 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1005 Dere-ChrDere06 18874425 18875243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1005 22 165 C2H2 Transcription Factor Family AT4G35280 29.341 4.62e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g1005 zf-C2H2_6 2.4e-09 CL0361