Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1004 ATGAAGTCCTTGTGTGGCCACTTGAGGTCTCACCCTAGAAGGGAACAGAAGGAAGCTCAACCCCACACTACTCCGTCGTCTCTCGTCGATCACCTGCGATCTTTATCACCCTCATGGTCGTCTTTCACTAGAAAGAGAGGTTGCCCGGGCAAAAGCGTCATTGTGTTCGAACCCTATATAGATGAATACGCTTTTGACCTCATGATGCTCGTGTATGGCAATAGTAATGTCCATGAATTTTTCAACCATAAGAGGCCAAGAAAGGTCAAAATTGCTAAACCTAATGGTGAAGATGATCATGATGATGTGAATGTGAAAGTGATAGGAAGTAGAAGTGGCAATGGACATCAGTGTAATATTTGCCAGAAGACATTCTCAACAGGTCAAGCTCTTGGAGGCCACATGAGATGTCATTGGACACCTAATAATGCAGAAGCTCAGCTAGCAGAAGCAAAGTCACCGAATGAAACCACTCCTGCTCCTCAGCCCATTGGTGTGCATGACGCAGTCCACTCATCACCTCTATGA 528 0.4564 MKSLCGHLRSHPRREQKEAQPHTTPSSLVDHLRSLSPSWSSFTRKRGCPGKSVIVFEPYIDEYAFDLMMLVYGNSNVHEFFNHKRPRKVKIAKPNGEDDHDDVNVKVIGSRSGNGHQCNICQKTFSTGQALGGHMRCHWTPNNAEAQLAEAKSPNETTPAPQPIGVHDAVHSSPL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1004 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 138 IPR013087 -
Dere06g1004 175 MobiDBLite consensus disorder prediction 1 31 - -
Dere06g1004 175 MobiDBLite consensus disorder prediction 150 175 - -
Dere06g1004 175 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Dere06g1004 175 SMART c2h2final6 116 138 IPR013087 -
Dere06g1004 175 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 157 IPR044653 GO:0003700
Dere06g1004 175 Pfam C2H2-type zinc finger 116 140 - -
Dere06g1004 175 SUPERFAMILY beta-beta-alpha zinc fingers 114 141 IPR036236 -
Dere06g1004 175 Gene3D Classic Zinc Finger 101 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1004 Dere-ChrDere06 18858826 18859353 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1004 2 139 C2H2 Transcription Factor Family AT4G35280 31.250 1.61e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g1004 zf-C2H2_6 4e-11 CL0361