Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1003 ATGCTCGTGTATGGAAATAGTAATGTCCATGAACTTTTCAACCATAAGAGGCCAAGAAAGGTCAAGACTGCTAAACCTAATGGTGAAGATGATCATGAAGATGTGAACGTGACAGTGATAGGAAGTAGAAGGGGCAATGGACATCAGTGTAATATTTGCCAGAAAACATTCTCAACAAGTCAAGCTCTTGGCGGCCACATGAGATATCATTGGACGCCTAATAATGCAAAAGCTCAGCTAGCAGAAGCAAAATCACCGAATGAAACCACTCCTGCTCCTCAGCCCCTTGGTGTGCATGATGCAGTCCACTCATCACCTCTATGA 324 0.4383 MLVYGNSNVHELFNHKRPRKVKTAKPNGEDDHEDVNVTVIGSRRGNGHQCNICQKTFSTSQALGGHMRYHWTPNNAKAQLAEAKSPNETTPAPQPLGVHDAVHSSPL 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1003 107 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 70 IPR013087 -
Dere06g1003 107 SMART c2h2final6 48 70 IPR013087 -
Dere06g1003 107 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Dere06g1003 107 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 12 89 IPR044653 GO:0003700
Dere06g1003 107 MobiDBLite consensus disorder prediction 74 107 - -
Dere06g1003 107 FunFam Zinc finger protein 46 70 - -
Dere06g1003 107 Pfam C2H2-type zinc finger 48 72 - -
Dere06g1003 107 Gene3D Classic Zinc Finger 33 95 - -
Dere06g1003 107 MobiDBLite consensus disorder prediction 14 35 - -
Dere06g1003 107 SUPERFAMILY beta-beta-alpha zinc fingers 46 73 IPR036236 -
Dere06g1003 107 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1003 Dere-ChrDere06 18822957 18823280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1003 40 96 C2H2 Transcription Factor Family AT1G02040 43.103 8.25e-10 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g1003 zf-C2H2_6 1.2e-08 CL0361