Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0999 ATGCCACTTTCCAATCACAAGCCCAAGCCCATTATGATTGTTAATCAACTCATAAACCAGAGAAAGAAGTTTCCATCCATGAAGTCCTTGTTTGGCCACTTGAGGTCTCACCATAGAAGGGAACAGAAGGAAACTCAACCCCACACTACTCCGTCGTCTCTCGTTGATCACTTGCGATCTTTATCACCCTCATGGTCGTCTTTCACCGGAAAGAGAGGTCGCCCGGGCAAAAGCGTCACTGTTTTCGAACCCTATATAGATGAATACGCTTTTGACCTCATGATGCTCGTGTATGGAAATAGTAATGTCCATGAATTTTTCAACCCTAAGAGGCCAAGAAAGGTCAAAACTGCTAAACCTAATGGTGAAGATGATCATGATGATGTGAACGCAAAAGTGATAGGAAGTAGAATTGGCATTGGACATCAGTGTAATATTTGCCAGAAGACATTCTCAACAGGTCAAGCTCTTGGAGACCACATGAGATATCATTGGACGCCTTATGATGCAGAAGCAAAGTCTTCGAATGAAACCACTTCTGCTCCTCAGCCCCTTGGTGTGCATGATGCAGTCCACTCATCACCTCTATGA 591 0.4416 MPLSNHKPKPIMIVNQLINQRKKFPSMKSLFGHLRSHHRREQKETQPHTTPSSLVDHLRSLSPSWSSFTGKRGRPGKSVTVFEPYIDEYAFDLMMLVYGNSNVHEFFNPKRPRKVKTAKPNGEDDHDDVNAKVIGSRIGIGHQCNICQKTFSTGQALGDHMRYHWTPYDAEAKSSNETTSAPQPLGVHDAVHSSPL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0999 196 MobiDBLite consensus disorder prediction 35 56 - -
Dere06g0999 196 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 22 179 IPR044653 GO:0003700
Dere06g0999 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 164 IPR013087 -
Dere06g0999 196 MobiDBLite consensus disorder prediction 173 196 - -
Dere06g0999 196 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Dere06g0999 196 SMART c2h2final6 142 164 IPR013087 -
Dere06g0999 196 SUPERFAMILY beta-beta-alpha zinc fingers 142 166 IPR036236 -
Dere06g0999 196 Gene3D Classic Zinc Finger 141 187 - -
Dere06g0999 196 Pfam C2H2-type zinc finger 22 39 - -
Dere06g0999 196 Pfam C2H2-type zinc finger 142 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0999 Dere-ChrDere06 18798527 18799345 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0999 2 165 C2H2 Transcription Factor Family AT2G17180 27.638 7.49e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g0999 zf-C2H2_6 3.5e-08 CL0361