Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0998 ATGGCCTGCTCGAAAGCATGTTGTTGCATGCACTGTAATTTGCCGGTCTTGGAGGAACATGTGCAAAGAAATTGTAAAGAGCCCAGAATCCTGTGCCAGGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGTTATTTCCATGGATGCTAACAACATCTCAAGATCAAGTAGCACTTACATTGGAAAGCTGAGATCAAACTTTCTTGCTACAAAGTTCATAATATATGATACACATCCTCCATTCACTTCTGCCCATATACCCCCTCCTGGGACTGGGAGGACAAGTCGAAGGTTTTACTCCAAAAAGGTTTCGCCAAAGCTAGCTACTGGCACACCTACACCATCTCGACCGGCCCCACCAGATCATGATAAGATAATTCTGCAGTTTGGCAAAGTTAGGAAAGATATGTTCACCATGGATTATCGGTATCCTCTATCTGCTTTCCAGGCTTTCGCAATATGCTTGAGCAACTTTGACACCAAATTGGCTTGCGAATAG 504 0.4325 MACSKACCCMHCNLPVLEEHVQRNCKEPRILCQALLVENGKFLLSVISMDANNISRSSSTYIGKLRSNFLATKFIIYDTHPPFTSAHIPPPGTGRTSRRFYSKKVSPKLATGTPTPSRPAPPDHDKIILQFGKVRKDMFTMDYRYPLSAFQAFAICLSNFDTKLACE 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0998 167 Gene3D Tubby Protein; Chain A 119 167 IPR025659 -
Dere06g0998 167 Gene3D Tubby Protein; Chain A 9 118 IPR025659 -
Dere06g0998 167 PANTHER TUBBY-RELATED 123 165 - -
Dere06g0998 167 SUPERFAMILY Tubby C-terminal domain-like 15 167 IPR025659 -
Dere06g0998 167 PRINTS Tubby superfamily signature 45 61 IPR000007 -
Dere06g0998 167 PRINTS Tubby superfamily signature 61 85 IPR000007 -
Dere06g0998 167 MobiDBLite consensus disorder prediction 105 125 - -
Dere06g0998 167 Pfam Tub family 31 108 IPR000007 -
Dere06g0998 167 Pfam Tub family 120 162 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0998 Dere-ChrDere06 18785400 18786314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0998 115 167 TUB Transcription Factor Family AT1G43640 79.245 2.06e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere06g0998 Tub 5.7e-16 CL0395