Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0997 ATGTACGACTTCGAGTCTGTGACTGAAACCCTAGTTCTTCAATTTCTGTTTAGAAAGAAGTTTCCATCCATGAAGTCCTTGTGTGGCCACTTGAGGTCTCACCATAGAAGGGAACAGAAGGAAACTCAACCCCACACTACTCCAATGTCTCTCGTTGATCACTTGCGATCTTTATCACCCTCATGGTCATCTTTCACCGGAAAGAGAGGTCGCCCGGGCAAAAGCGTCATTGTGTTCGAACCCTATATAGATGAATACGCTTTTGACCTCATGATGCTCGTGTATGGCAATAGTAATGTCCATGAATTTTTCAACCATAAGAGGCCGGGAAAGGTCAAAACTGCTAAACCTAATGGTGAAGATGATCATGATGATGTGAATGTGAAAGTGATAGGAAGTAGCAGTGGCAATGGACATCAGTGTAATATTTGCCAGAAGACATTCTCAACAGGTCAAGCTCTTGGAGGCCACATGAGATGTCATTGGACACCTAATAACGCAGAAGCTCAGCTAACAGAAGCAAAGTCACCGAATGAAACCACTCCTGCTCCTCAGCCCGTTGGTGTGCATGATGCAGTCCACTCATCACCTCTATGA 597 0.4489 MYDFESVTETLVLQFLFRKKFPSMKSLCGHLRSHHRREQKETQPHTTPMSLVDHLRSLSPSWSSFTGKRGRPGKSVIVFEPYIDEYAFDLMMLVYGNSNVHEFFNHKRPGKVKTAKPNGEDDHDDVNVKVIGSSSGNGHQCNICQKTFSTGQALGGHMRCHWTPNNAEAQLTEAKSPNETTPAPQPVGVHDAVHSSPL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0997 198 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 19 180 IPR044653 GO:0003700
Dere06g0997 198 SMART c2h2final6 139 161 IPR013087 -
Dere06g0997 198 Gene3D Classic Zinc Finger 126 186 - -
Dere06g0997 198 Pfam C2H2-type zinc finger 139 163 - -
Dere06g0997 198 Pfam C2H2-type zinc finger 19 36 - -
Dere06g0997 198 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Dere06g0997 198 MobiDBLite consensus disorder prediction 172 198 - -
Dere06g0997 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Dere06g0997 198 SUPERFAMILY beta-beta-alpha zinc fingers 137 164 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0997 Dere-ChrDere06 18766390 18770019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0997 19 162 C2H2 Transcription Factor Family AT4G35280 29.448 1.46e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g0997 zf-C2H2_6 4.8e-11 CL0361