Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0985 ATGACAGATTTTCAACCGCTACAGCAGAAGCCTGAATCTACTGATGCCCATGCTGAGTTTGAGCGTGGGCTGGAGGAGTTTATGCGGGGGCACTTGGATGATTGCATGTCATTTGCTTCATGTAGTTCTGCCCGAACTCCAGATGGGGAGGATGATGAGGGCGATCAGCTCGTTAGGAGGAGACGAAGATCTGATCTTGAAGGGGATGATTTAGCAGAGTCATCAGCTGCACGCCGGCGCCACTCGCGGATTTTGAGCAGATGGGCTGCGCACCAGGCCCAAGAGATGATAACTACAATTGAGAGAAGGAATCGTGAGTCTGAGTTAATGGCACTTGCAGGACTACACACAGTCTCAATGTTGGACTCTTCTTTTCTGCGGGGATCACAGACTCCAACTTCTGGCCAGGAGGGGGCTGTAGAGAGGCCCAGCACTCAGGCATCTGCCATTTTACAGATGTGGCGTGAATTGGAGGATGAGCACTTACTGAATCGGGCACGTGAAAGAATGAGGGAAAGGTTGCGGCGACAAAGGAGTTCTGATTCTAATGCCAATGAATCAAGTACCATGACAGATAGTCGAGGCAGTGAGAATCAAGGGAGCTTGGTGGATGCAAGTGAAAGTGAAAATGATTATGGGACTTGGTCACATGATCAGATTCAATCACAGCATGAAAATGGCAATCATAATGGGTCTAGTAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGAGGATGGATGGAAAGTGGCATTAGTGATCATTCATCTAATGCAAGTCAGAGAAACAATAATCGCAGGGCAGAATGGCTTGGTGAAACAGAGCGTGAAAGGGTAAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGAGAGGTTCTCGTGGGAGCCGGAGGGATAGTCAAGTCACTGAAAGTGGTGTTCAAATTGATCGAGTTCGTGATGGTTTGATAACTGATCATGATGAGGGCCAGCCAGAGCATGTTCGCCGGGACTTGTTAAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGGTAGAAAGGGAAAGACAGAGAGAGCTGCAGGGTTTGTTGGAGCACCGGGCTGTTTCTGACTTTGCTCATCGTAACCGCATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCTTCTATGGCTGCTCATGAATTAGTTCAGTTAAGACAACGGCACACAGTCTCTGGTATAAGAGAAGGCTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCAGCAATTCTGATGGCACATCTAATAGTAACAGCAGTGAAACTAGAAGTGACCTGAACCAAGCAAACAATTCAATAGATGTGCAGCATGAAAATTATGAACAGGGGCAGATTAGGAGCCTGGAAACTGACGTGCAGCAGTTGGCTGATCAAACAGGAACTTTTGAAAGTAGCACCAGTGAGAGTATAAGTTGGCAAGAAACTGGTAATCAAGGAGGGAACTGGCAGGAACAAGTTACTGAAGATGGTCGTGGGAATTGGCAACGAAGAGCTTATGGTCCATTCAATCAGTTAAGAGATGGAAGTGCAGTTAGTGATTGGCCTCAGGACACTCCAAGAAATGTAGAAGGGGATGATACTGATACACGAGAAGCTCAGGGAATTTGGCATGAGGATAATTCAAGGGAAGCTGCTGGTAATTGGTCTGAAGAACCTTCTGGTCCTCCAAGGAATCGTCGAGGTGTCACTCTCAGGAGATTTAATCGATTTCATCCACCTGATGATGATAATGTATATAGCATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAATCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCATAGAAACATGCCAACACCATCTCCTGCCTCACCTGATAGGGATCCTGAACAACAGGGGGATGAACGTAATGGGGTTCAACATGATGCCATGAATAGGCCTTCACTGGTGTTGCCATCTCCTCCAGTACCTCCACCTCAACCGCTTTGGCACCAGGACTTACATCAGACTGGATGGTCTCGCCATAGCATGCATCGTTCTGAAATTGAATGGGAGATAATCAATGATTTGAGATCAGATATGGCAAGACTTCAACAAGGCATGAATCACATGCAGAGGATGCTGGAGGCTTGCATGGACATGCAACTGGAGTTACAGCGTTCTGTTAGACAGGAAGTGTCTGCAGCACTGAATCGGTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCCGAGGATGGGTCTAAATGGGGCCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAGCCATATTGATTCGCTCTTGTACAGATGTGGTCACATGTGCACTTGTTCAAAATGTGCCAATGAGTTAGTTCGTGGTGGAGGAAAGTGCCCCTTATGCCGAGCACCTATTGTCGAGGTGATCCGAGCATATTCCATTATGTAA 2565 0.4678 MTDFQPLQQKPESTDAHAEFERGLEEFMRGHLDDCMSFASCSSARTPDGEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQTPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRRQRSSDSNANESSTMTDSRGSENQGSLVDASESENDYGTWSHDQIQSQHENGNHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNASQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVTESGVQIDRVRDGLITDHDEGQPEHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSMAAHELVQLRQRHTVSGIREGFRSRLENIVRGQAGSNSDGTSNSNSSETRSDLNQANNSIDVQHENYEQGQIRSLETDVQQLADQTGTFESSTSESISWQETGNQGGNWQEQVTEDGRGNWQRRAYGPFNQLRDGSAVSDWPQDTPRNVEGDDTDTREAQGIWHEDNSREAAGNWSEEPSGPPRNRRGVTLRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNMPTPSPASPDRDPEQQGDERNGVQHDAMNRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIM 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0985 854 MobiDBLite consensus disorder prediction 487 594 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 653 709 - -
Dere06g0985 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Dere06g0985 854 MobiDBLite consensus disorder prediction 552 571 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 1 22 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 172 244 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 125 146 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 256 277 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 298 320 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 436 459 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 41 78 - -
Dere06g0985 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 854 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 181 237 - -
Dere06g0985 854 SUPERFAMILY RING/U-box 801 847 - -
Dere06g0985 854 Coils Coil 731 751 - -
Dere06g0985 854 CDD mRING-HC-C3HC5_NEU1 799 851 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 487 522 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 298 317 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 435 459 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 259 275 - -
Dere06g0985 854 MobiDBLite consensus disorder prediction 46 78 - -
Dere06g0985 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Dere06g0985 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 789 852 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0985 Dere-ChrDere06 18530734 18536544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0985 802 848 C3H Transcription Factor Family AT3G06140 42.553 1.00e-06 50.1