Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0952 ATGGGTGACCCGTACCCGTATGGGCTTCCCGATTTCCGGCAGCTCATAGCAGGAAGAATCCATCCTGATCTGGCGGAGCCACCGTCTCTGGGTGGTGCTGCTGCTCCACCACCCAGCAGCTACGACGTCGTTTTCTCTCATGGGTTCGCTACTCAACACTTTGCTCATCATGACTATCCCTCAAGTGTCGTCAATATTCCCACCAACGCAAACCCTACTGTTACTCACGCCGCTGCTTCAGTAGATCATCATCATCATCATCATGCCACGACTGCATTCTGCAGTAGCAGCAGCATAGAGGAAAAGGGATGGCTTGGATTTGATGCTACTGCCAACAACAGGTGGCCTAGACAAGAGACTCTTTCACTCCTAGAGATCAGATCTCGTCTCGATTCCAAGTTCAGAGAGACCAATCACAAAGGTCCATTGTGGAATGAAATTTCTAGGAGTGAGTTTAGTCCAATAAACTCCACTGACCCCGTGGGTAGTTGCACTGGGTTTGCTGAAAGGATAATGGGGGAGGAATATGGGTACCAAAGAAGTGGGAAAAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGGAAAGCAGGAAGACATGATGGAAAGCACTATAGATTCTTCCGCCAGCTCGAAGCAATATGTGGGGAAACATCAAGCACCACTCATCATCCCTTCAACGCTGCTACTTCTTCAGATTACCAAGCTCCAATAAGCTTCACAGATGGTGAACTTCTTCATCACAACAACCTCAAGTACAGCTCAAAGAGCCTCAGCCTCTCGAACAATTCATCTGATCAGTTCGAGACATCCTCGTCTGAGAACAACAATGACGAGGATCTTTCGACCATTGCCTATATGATGAAGCAGCAGAAAGGGATGATGGAGATAGACCACCAAAGACAAAGTCCAAGGGTGAGGAAAAGCTTGAGAGCTGAGGTTGAGGAGATTGTGGATTCACACATGACGAAGATCATAGAGACTCAAGATGCTTGGATGGAGAAGATGATGAGTGTGGTCGAGCAAAGAGAGCAAGAAATGGCGTCTAAGGAGGAAGAGAGGAAGAAAGATTCCATGAGCTTTGATCGAGAAGTGCATCAACTCTGGGCCAAAGAGAGAGCTTGGATTGAAACAAGAGACGCTGCATTAATGGAGGTCGTGAAGAAACACTTGGGAAAGGAATTCATTGAGCCTATCGTTGAACGTGATCAAGAACTGCAAAACAAGAAAAGCAATAGTAGTAATGGGTGGACAGAACTGGAGATTTCAAATCTGATACGACTGAGGAGTGGTTTTGAAATGAGATTCCAAGAAAGTGGTGGTGATGGGTACTTGTTGGAGAATAATGGTCTTTGGGATGAAATAGCAGCAAAAATGGCTTATTTGGGGTTTGATAGGAGTGCCTGTCAGTGCAAGCAAATATGGGGTGAAATCAGCATATCTCTCAACAAGACAACGGAGTGCAGTAGTACTGGTAGTATCATTAAAACAAGGCCTTTGTGTGTGGGACTTCAGCTTACGGAGGATGACATTTCACATTCAAGCTCCAACGCAGGCAACAAAGGTAATTATCTGACAGCTGCTTCAGAGTTCTAG 1617 0.457 MGDPYPYGLPDFRQLIAGRIHPDLAEPPSLGGAAAPPPSSYDVVFSHGFATQHFAHHDYPSSVVNIPTNANPTVTHAAASVDHHHHHHATTAFCSSSSIEEKGWLGFDATANNRWPRQETLSLLEIRSRLDSKFRETNHKGPLWNEISRSEFSPINSTDPVGSCTGFAERIMGEEYGYQRSGKKCKEKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEAICGETSSTTHHPFNAATSSDYQAPISFTDGELLHHNNLKYSSKSLSLSNNSSDQFETSSSENNNDEDLSTIAYMMKQQKGMMEIDHQRQSPRVRKSLRAEVEEIVDSHMTKIIETQDAWMEKMMSVVEQREQEMASKEEERKKDSMSFDREVHQLWAKERAWIETRDAALMEVVKKHLGKEFIEPIVERDQELQNKKSNSSNGWTELEISNLIRLRSGFEMRFQESGGDGYLLENNGLWDEIAAKMAYLGFDRSACQCKQIWGEISISLNKTTECSSTGSIIKTRPLCVGLQLTEDDISHSSSNAGNKGNYLTAASEF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0952 538 Gene3D - 115 198 - -
Dere06g0952 538 Gene3D - 424 491 - -
Dere06g0952 538 ProSiteProfiles Myb-like domain profile. 416 486 IPR001005 -
Dere06g0952 538 Pfam Myb/SANT-like DNA-binding domain 422 494 IPR044822 -
Dere06g0952 538 Pfam Myb/SANT-like DNA-binding domain 113 221 IPR044822 -
Dere06g0952 538 MobiDBLite consensus disorder prediction 264 287 - -
Dere06g0952 538 Coils Coil 340 360 - -
Dere06g0952 538 CDD GT1 113 200 - -
Dere06g0952 538 CDD GT1 424 493 - -
Dere06g0952 538 PANTHER FI21293P1 86 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0952 Dere-ChrDere06 17591444 17593868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0952 114 491 Trihelix Transcription Factor Family AT5G03680 40.580 1.31e-80 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere06g0952 Myb_DNA-bind_4 1.3e-14 CL0123