Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0944 ATGGTGACTTGTGTGTCCATGTCTGGTCAAGATGATCTTGAACTGTCAAGAGATGCTAGCCATTACAGTCTCTCTACTGCAATATTACCTTCACTTGGAGCCACAAGTACAGGCAAAGTCACCCTCAGGACCTTCATTGTTTCACCTTATGATCGTCGTTACAGCGAAGATTACCACTTATCGCATCAATTGTTGAAACGAGGCTTGGATCCAAATGAATCTGACATTAAAGGAAGAACTGCTTTGATGTATTCTAATGGTAATGTCCCGCTTTGGGAGGCTATAAAAGGGGGACATGAACTTGTAATAAAGCAGTTAGTAGAAAATGGCGCCAACTTAAAATCTGGAGATGTGGGTCAATATGCATGTGTTGCTGCTGAACAAAACAATCTAAACTTGCATAAGGATATAGGGAAACATGGAGGAAATGTAGCTCTTTCCGGGAACAACTTTGGGATCACAGTTTTACATGTTGCAATCTGCGAAGGTAATGTTGCGATTGTCAATTTCCTTTTGGATCATGGGGCTGACATTAACAAATCAGATAAGCATGGTTGGACTCCAAAAGAGCTAGCAGATCAACAAGGACACAAAGAAATTAAGGTTGAAGTTGACAGAAAACTTGTACTTCTACCAGGGAGCTTTAAGGAGCTGCTTGAGATTGGATCTGATAAATTCAGTGTCATTCCTACTAAGATTTTAAGCAAAGATGGAGCAGAAATTGATGATTTAGATGTGATTAGAGATGGTGATCATGTATTGTTTGTCAGTTTTAGGAAAGCCCTAAATCCCAATGTCCCTATACCTAATAATGTTGTGCTTTCCTAG 828 0.3986 MVTCVSMSGQDDLELSRDASHYSLSTAILPSLGATSTGKVTLRTFIVSPYDRRYSEDYHLSHQLLKRGLDPNESDIKGRTALMYSNGNVPLWEAIKGGHELVIKQLVENGANLKSGDVGQYACVAAEQNNLNLHKDIGKHGGNVALSGNNFGITVLHVAICEGNVAIVNFLLDHGADINKSDKHGWTPKELADQQGHKEIKVEVDRKLVLLPGSFKELLEIGSDKFSVIPTKILSKDGAEIDDLDVIRDGDHVLFVSFRKALNPNVPIPNNVVLS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0944 275 Gene3D - 52 203 IPR036770 -
Dere06g0944 275 SMART ANK_2a 151 180 IPR002110 GO:0005515
Dere06g0944 275 SMART ANK_2a 86 115 IPR002110 GO:0005515
Dere06g0944 275 Pfam KHA, dimerisation domain of potassium ion channel 201 254 IPR021789 -
Dere06g0944 275 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Dere06g0944 275 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Dere06g0944 275 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515
Dere06g0944 275 ProSiteProfiles KHA domain profile. 189 273 IPR021789 -
Dere06g0944 275 PANTHER POTASSIUM CHANNEL AKT1 57 201 IPR045319 GO:0005249|GO:0006813
Dere06g0944 275 Pfam Ankyrin repeats (3 copies) 92 182 IPR002110 GO:0005515
Dere06g0944 275 ProSiteProfiles Ankyrin repeat region circular profile. 86 117 - -
Dere06g0944 275 SUPERFAMILY Ankyrin repeat 59 200 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0944 Dere-ChrDere06 17372174 17375767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0944 207 257 Ion Channels AT2G26650 69.231 4.98e-17 79.0