Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0928 ATGAGCAAGAGAGACAGAGAGCAGGTCGAAGATCGTCACAGCATAACCATGGCGAACTGCTTGATGCTGCTCTCTCGCGGTGTCCAATACGATCATCAGTATCACAGCCACCGCGTCTTCGAGTGCAAGACCTGCAACCGGCAGTTCCCGTCGTTCCAGGCGCTCGGAGGCCATCGCGCGAGCCACAAGAAGCCGGCGAGGCTCGCCGCAGACGGCGGTGATGACGTCAGTGAGTTGCGTCATCATGATGCCAAGGCTAAGACGCACGAGTGCTCTATTTGTGGACTGGAGTTCGCAATAGGGCAGGCTTTGGGGGGTCACATGAGAAGGCATAGAGCCGATAATGGCAACATCAAGACGCACCGTTCTGGGATCGCTATGAGCAGTAGTAGCAGTTTTGATTCTGATAAGGTTGTGAGTAGTAATAAGAGAAAGAGGGCTTTGGTTTTGGATTTGAACTTGACACCCTTTGAGAATGATTTGGAGTTTCTCAAAATTGGGATTGAAAACTCAGCTTTGAGCGTTTGA 528 0.5152 MSKRDREQVEDRHSITMANCLMLLSRGVQYDHQYHSHRVFECKTCNRQFPSFQALGGHRASHKKPARLAADGGDDVSELRHHDAKAKTHECSICGLEFAIGQALGGHMRRHRADNGNIKTHRSGIAMSSSSSFDSDKVVSSNKRKRALVLDLNLTPFENDLEFLKIGIENSALSV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0928 175 Gene3D Classic Zinc Finger 38 111 - -
Dere06g0928 175 PANTHER ZINC FINGER PROTEIN ZAT5 9 159 - -
Dere06g0928 175 Pfam C2H2-type zinc finger 89 113 - -
Dere06g0928 175 Pfam C2H2-type zinc finger 39 65 - -
Dere06g0928 175 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Dere06g0928 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Dere06g0928 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Dere06g0928 175 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Dere06g0928 175 SMART c2h2final6 40 62 IPR013087 -
Dere06g0928 175 SMART c2h2final6 89 111 IPR013087 -
Dere06g0928 175 SUPERFAMILY beta-beta-alpha zinc fingers 38 111 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0928 Dere-ChrDere06 17102578 17103105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0928 17 167 C2H2 Transcription Factor Family AT2G28710 49.007 1.55e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g0928 zf-C2H2_6 9.6e-10 CL0361