Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0926 ATGGTTCTATCCAACAAGAAGCTGAAACAGAGGCTAAGAGCCGAGTTAGCTCAATCTCAGGCCGCAAATCCAGACTTGACTTCACTTCCACACGGCTCTCTCAAGAATCTTCTAGACCCTACCACCCCGAAACTCCGATTATCAAAGAGAGAAAAACGCAGAAAGGTTCGCTCTTTGCAACATCCCGAGGATACCCAGGAAGGCGGTGATGCTCGTAGCATTGATGAGAATAAAGAAGAGGAAGGAACAAAGAAGAACAAAAAGAGGAAGAGTAAGGTTGACGACAACGGTGTGGCAAGTGGGGTTGTGAAGGATGCGAAGAAACCAAAGAAGAAACATAATAAGAAGAAGCAGAAAAAAGCCAACACAGCCGAAAGAAAGGATGCTAATTCTGGTGATGAAAATTTTGAGGCCTCAGAGTTAACTAAGAGTAATGCGAGTGAACACAATGGTGATGTTCCTACAAAAGTTTATGTTGGAGGAATACCCTATTATTCAACCGAGGATGACATTCGAAGCTATTTTGAAGGCTGTGGCACAATAACTGAAATCGATTCCATGAAGTTTCCCGAGAGTGGAAAGTTTCGAGGGATTGCCATTATTAGTTTTAAGACTGAAGCTGCAGCAAAACGTGCACTGGCTCTCGACGGATCTGACATGGGAGGGCTCTTTCTCAAAATCCAACCTTATAAAGCGACTCGAATTGGTAAGGCGTCACATTTTGCCCCAAAACTTGTGGAGGGCTACAATAGAATCTATGTCGGAAATTTGCCGTGGGATATAAATGAGGATCAATTAAGGAAACTATTCTCAAATTGTAGCATATCATCCATTCGTTTTGGTATGGACAAGGAGACAGGAGAATTCCGGGGGTATGCCCATGTGGATTTCACTGATAGTCAGTCACTAAAAACGGCACTAACCTTGGACCAAAAGGTTTTGTGTGGTAGACCTGTTAGGATAACTTGTGCAGTTCCTTTGAAGAAGGCAGGGAACCACCAAGCAAACGATGTGCCTACGAGCAACGAAGTAAATGGTGAGAAGATGACTCCCACTGGAAGTGGCAAAATGAAGAGGAGGACATGCTATGACTGTGGTGAAAAGGGACATATTTCTTCAGCATGCCCAAAGAAACAAAATGCTGATTCAACTACAAGCTAG 1161 0.4358 MVLSNKKLKQRLRAELAQSQAANPDLTSLPHGSLKNLLDPTTPKLRLSKREKRRKVRSLQHPEDTQEGGDARSIDENKEEEGTKKNKKRKSKVDDNGVASGVVKDAKKPKKKHNKKKQKKANTAERKDANSGDENFEASELTKSNASEHNGDVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDSMKFPESGKFRGIAIISFKTEAAAKRALALDGSDMGGLFLKIQPYKATRIGKASHFAPKLVEGYNRIYVGNLPWDINEDQLRKLFSNCSISSIRFGMDKETGEFRGYAHVDFTDSQSLKTALTLDQKVLCGRPVRITCAVPLKKAGNHQANDVPTSNEVNGEKMTPTGSGKMKRRTCYDCGEKGHISSACPKKQNADSTTS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0926 386 Gene3D - 101 241 IPR012677 -
Dere06g0926 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Dere06g0926 386 SMART rrm1_1 251 322 IPR000504 GO:0003723
Dere06g0926 386 SMART rrm1_1 156 228 IPR000504 GO:0003723
Dere06g0926 386 ProSiteProfiles Zinc finger CCHC-type profile. 362 377 IPR001878 GO:0003676|GO:0008270
Dere06g0926 386 MobiDBLite consensus disorder prediction 332 358 - -
Dere06g0926 386 MobiDBLite consensus disorder prediction 57 95 - -
Dere06g0926 386 SUPERFAMILY RNA-binding domain, RBD 244 330 IPR035979 GO:0003676
Dere06g0926 386 SMART c2hcfinal6 361 377 IPR001878 GO:0003676|GO:0008270
Dere06g0926 386 MobiDBLite consensus disorder prediction 334 349 - -
Dere06g0926 386 MobiDBLite consensus disorder prediction 106 120 - -
Dere06g0926 386 CDD RRM1_PHIP1 157 228 IPR034361 -
Dere06g0926 386 Gene3D - 339 386 - -
Dere06g0926 386 Pfam Zinc knuckle 360 377 IPR001878 GO:0003676|GO:0008270
Dere06g0926 386 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 76 231 - -
Dere06g0926 386 MobiDBLite consensus disorder prediction 14 153 - -
Dere06g0926 386 SUPERFAMILY RNA-binding domain, RBD 153 231 IPR035979 GO:0003676
Dere06g0926 386 Gene3D - 244 334 IPR012677 -
Dere06g0926 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 326 IPR000504 GO:0003723
Dere06g0926 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Dere06g0926 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 319 IPR000504 GO:0003723
Dere06g0926 386 MobiDBLite consensus disorder prediction 16 30 - -
Dere06g0926 386 SUPERFAMILY Retrovirus zinc finger-like domains 349 381 IPR036875 GO:0003676|GO:0008270
Dere06g0926 386 MobiDBLite consensus disorder prediction 135 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0926 Dere-ChrDere06 17063657 17078186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0926 155 354 Eukaryotic Initiation Factors Gene Family AT2G36660 27.014 2.21e-08 53.9