Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0909 ATGGCTTCGCTACTACCATACGGCGACGTAGATTTCAGCTTGAGGGCAATGGCGGGTCGCGCGGAGGGTTTTGGCCGCAACTCGATCGGTGGCCTCCATGGCCCTCTCTATTTCGTCACCACCCTAGCCGATGATGGTCCTGGATCCCTTCGGAATGGATGTCGTGGAAAGGAGCCACTCTGGATTGTTTTTGAAGTTTCGGGTACAATTCATCTTTCATCATACCTGAGTGTATCATCTTATAAGACAATAGATGGCCGAGGCCAGAGGATAAAGCTCACAGGAAAGGGCTTAAGGCTGAAAGAATGTGAGCATATAATTATATGCAACCTTCAGTTTGAAGGTGGTAGGGGTCATGATGTTGATGGCATTCAAATAAAACCAAATTCTAGGCACATATGGATAGATCGCTGCAGTCTTCATGATTATGATGATGGGCTTATAGACATCACAAGACAAAGCACAGATATTACTATATCTAGATGTTACTTTGCACAGCATGACAAGACCATGCTAATTGGAGCTGACCCATCTCACATTGGCGATAGATGCATCCGGGTGACAATTCATCATTGTTTCTTTGATGGGACACGGCAAAGACATCCTCGTGTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGACATTGGGGTATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAGTGCAACATGTATGAGGCAGGAAATAAGAAAAAGACTTTTGAATTCTACACGGAGAAGGCCGCAGATAAGGAGGAGCAGAAATCTGGCTACATAAGATCTGAAGGGGACATATTTCTGAATGGTGCGCAGCCATTGTTACAGACACAATACAAAGAAGAATGCACGTTCCATCCTAGTGAATATTATCCAACTTGGACAATGGAAGCACCCTCACATTCTTTTAAAGATATTGTCCAATTGTGTACAGGTTGGCAATCCATTTCTCGGCCTGTAGACCATCCTGTCTGTAATTAG 999 0.4384 MASLLPYGDVDFSLRAMAGRAEGFGRNSIGGLHGPLYFVTTLADDGPGSLRNGCRGKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLHDYDDGLIDITRQSTDITISRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRHWGIYAVCASVESQIYSQCNMYEAGNKKKTFEFYTEKAADKEEQKSGYIRSEGDIFLNGAQPLLQTQYKEECTFHPSEYYPTWTMEAPSHSFKDIVQLCTGWQSISRPVDHPVCN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0909 332 Gene3D - 9 314 IPR012334 -
Dere06g0909 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Dere06g0909 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Dere06g0909 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Dere06g0909 332 SMART amb_all 32 245 IPR002022 -
Dere06g0909 332 SUPERFAMILY Pectin lyase-like 18 327 IPR011050 -
Dere06g0909 332 PANTHER PECTATE LYASE 18-RELATED 15 287 IPR045032 GO:0030570
Dere06g0909 332 Pfam Pectate lyase 76 238 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0909 Dere-ChrDere06 16560985 16563877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0909 42 330 Polysaccharide Lyase AT3G55140 82.353 0.0 515