Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0890 ATGCTGTTGCGAGCTCGCACGGCAAGCCTCTGGTGGTCTCTACGTCCTGTTTTCGGCGCCTATCAGTCTCGCCCTTCCTCCTCCTTTCACCTTAACCTTTCTTCTTTATCCCAACCTCAGGTTTCTGGCATCTTGGACGATGACTGCAGTTGTTTTTTGCCGTGGTTGGAGCGAAAAGCTGGTTCCAGGATTTCGTCAGCGCTTTCAATTGGGAAATCTTCATACGGCAGGGCTCTGTTTGCTTCTGGGATCATACGCTCTGGAGAATCTATTTTAAAGGTTCCTTATAGCGTGCAAATTAATGTGGATAATTTACTCCCAGACATCAGATTTTTGATCAGTGATGAAGTTGGAAATATTGCGAAACTTGCCATTGTTATTCTAGTTGAGCAGAAATTGGGTCGGAACTCTGAGTGGGACCCATATATCAGCTGTCTTCCTCAGCAAGGGGAGCTGCATAATACGATATTTTGGAGTGAAAATGAGTTGGAAATGATTCGGATAAGCTCAGTATATCAGGAAACTATCAATCAAAAGTCTCAAATTGAGAGGGACTTTTTGGCAGTTAGACTGGTTTTCAAAAGCTTCCCTCAAATTTTTGGAGAATTTACTTTTAGGGATTTCATACATGCATGCACACTAGACCTGCTATCTCACATCTTATATGTCAAATTACCAGTTGGTTCTCGAGCATGGGGAAGCATGAAGGGTTTATCTCTGATTCCATTTGCAGATTTCTTAAATCATGATGGAGTTTCAGAAGCAATAATAATGAGTGATGATGATGAACAATACTCAGAAGTTATTGCTGATCGTGATTATGCTCCTGGTGAACAGGTACTAATAAGTTATGGAAAATTTTCTAATGCTACCTTGATGCTGGACTTTGGCTTTACACTTCCATACAACATTTATGATGAGGTTCAGATCCATCTTGATATACCTAAGCATGATCCTCTGCATGACCTAAAGGTGGAACTCCTGCAGCACTATTTTGTGCCTACTGCCAAAGATGTGAAAGGCTTGAAAAATTCTGTGAATTCTTTCATAATCAAGGAAGTGATGTCTGCCAGAGGCAAAGGGAAGGGACTTCCACAATCTCTTCGCGCATTTGCTCGTGTTCTTTCTTGCACCTCTCCCCAAGACCTGAATGATTTGGCCATGGAGGCTGCACAAACTGATGGTAGGCTGGCTAGGCGTCCTTTGCGCGATGTGAACAAAGAGATTCAAGCGCACCTGATGTTGTCATCATTACTCAACCTATTAATTGTTGAGCGCTCCGAAGCTATTCAGTCACTGGAATTTTCCGGTTTTCCTTTCACTTCTGCAAAACTTCCTGCTAGAACTATAATGGCTCGGGATCTCATAGGTGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTGGAAAATTACTGTTCTTCCTTGACTGGACAGTATTAA 1446 0.4267 MLLRARTASLWWSLRPVFGAYQSRPSSSFHLNLSSLSQPQVSGILDDDCSCFLPWLERKAGSRISSALSIGKSSYGRALFASGIIRSGESILKVPYSVQINVDNLLPDIRFLISDEVGNIAKLAIVILVEQKLGRNSEWDPYISCLPQQGELHNTIFWSENELEMIRISSVYQETINQKSQIERDFLAVRLVFKSFPQIFGEFTFRDFIHACTLDLLSHILYVKLPVGSRAWGSMKGLSLIPFADFLNHDGVSEAIIMSDDDEQYSEVIADRDYAPGEQVLISYGKFSNATLMLDFGFTLPYNIYDEVQIHLDIPKHDPLHDLKVELLQHYFVPTAKDVKGLKNSVNSFIIKEVMSARGKGKGLPQSLRAFARVLSCTSPQDLNDLAMEAAQTDGRLARRPLRDVNKEIQAHLMLSSLLNLLIVERSEAIQSLEFSGFPFTSAKLPARTIMARDLIGGELRILKSASAWLENYCSSLTGQY 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0890 481 Gene3D set domain protein methyltransferase, domain 1 45 298 - -
Dere06g0890 481 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 47 428 - -
Dere06g0890 481 Pfam Rubisco LSMT substrate-binding 316 423 IPR015353 -
Dere06g0890 481 Gene3D - 301 476 IPR036464 -
Dere06g0890 481 ProSiteProfiles SET domain profile. 62 285 IPR001214 GO:0005515
Dere06g0890 481 Pfam SET domain 76 285 IPR001214 GO:0005515
Dere06g0890 481 SUPERFAMILY SET domain 48 303 IPR046341 -
Dere06g0890 481 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 45 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0890 Dere-ChrDere06 16128312 16137742 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere06g0890 SET 3.2e-10 No_clan