Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0865 ATGGGAAATAATTGTGTTGGTCCGAGTATTTCCAAAAATGGTTTTCTCCAATCAGTTTCTGCAGCAATGTGGAAATCCCGAACACTCGATGATGAATCAGTTTCTAATGGAGGAACTGTAAATGAGGAAACGGCTAGAGAACCTGAATCATCGTCCATGCCTGTCCAGAGCAAACCTCCCGAGCAAATGACTATGCCGAAACCAGAAGCTAAACCAGAACAGGGCCAGGAGCCTAAACCCAAGAAACCTGCTTCTATGAAAAGGGTGTCTAGTGCAGGGCTTCGTGTTGGTTCTGTATTACAAACAAATACTGGTAATTTCAAGGAGTTCTATACTCTCGGGAGAAAACTAGGCCAGGGTCAGTTTGGGACAACATTTTTATGCGTGGAGCAGGCAACGGGCAAACAGTATGCCTGTAAATCTATGGCTAAAAGGAAGATGGTAACTGATGAGGATGTTGAGGATGTGAGAAGAGAAATTCAAATAATGCATCACTTGGCTGGGCATCCTAATGTTATATCCATAAAAGGTGCTTATGAGGATGCAGTGGCCGTTCATGTTGTAATGGAGCTATGTGCTGGTGGCGAGCTTTTCGACAGGATTATTCAGCGTGGGCATTATACAGAAAGAAAGGCTGCCGAGCTCATTAGGACGATAGTTGGGGTTGTGGAAGCTTGTCATTCTCTCGGTGTGATGCACAGGGATCTTAAACCTGAGAACTTTCTCTTCGTCAATCAGCAGGAGGATTCTCTTCTCAAAACCATAGACTTCGGATTATCTATATTTTTTAAGCCAGGTGATGTATTTACTGATGTGGTTGGCAGCCCATATTATGTTGCCCCAGAAGTTTTGCGAAAGCGTTATGGTCCTGAAGCTGATGTTTGGAGTGCTGGGGTGATTCTTTACATTCTGTTGAGTGGAGTGCCTCCATTTTGGGCTGAAACTGAGCAAGGAATATTTGAAGAGGTTCTGCATGGTGACCTTGACTTTTCATCTGACCCCTGGCCAAGCATTTCTGAAAGTGCCAAAGATTTAGTAAGGAAAATGCTTGATCGTGACCCTAGATGGCGGCTGACTGCACATCAAGTTTTATGTCATCCTTGGATTCACGTTGATGGCGTAGCTCCTGACAAACCACTTGATTCTGCTGTATTAAGTCGCTTGAAGCAATTTTCTGCCATGAACAGGTTCAAGAAAATGGCTCTTAGAGTTATTGCTGAGAGCTTATCTGAAGAAGAAATAGCTGGCTTGAGAGAAATGTTCAAGATGATAGATACAGACAACAGTGGTCAAATCACATTTGATGAGCTTAAGGCTGGTTTGAAAAGAGTGGGTGCTAATATTAAGGAGTCTGAAATTTATGATTTGATGCAAGCAGCTGATGTTGACAATAGTGGAACAATCGATTATGGAGAGTTTATTGCTGCAACATTGCATCTAAACAAGATTGAGAGAGAAGATCATCTTTTTGCAGCCTTTTCTTACTTTGATAAGGATGGAAGTGGCTATATTACTCAAGATGAACTTCAACAAGCGTGTGTGGAGTTCGGCGTAGAAGACGTCCATTTGGAAGAGATGATCAAGGAAATTGATCAGGATAATGATGGACGTATAGATTATAATGAGTTTGTAGCCATGATGCAGAAAGGAAATGTTCCTGGAATTGGTAGGAAGGGCTTAGAAAATAGCTTCAGCATCGGTTTCAGGGAGAGACATCAAAACTCCAGTGTTTATATATAG 1740 0.423 MGNNCVGPSISKNGFLQSVSAAMWKSRTLDDESVSNGGTVNEETAREPESSSMPVQSKPPEQMTMPKPEAKPEQGQEPKPKKPASMKRVSSAGLRVGSVLQTNTGNFKEFYTLGRKLGQGQFGTTFLCVEQATGKQYACKSMAKRKMVTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELIRTIVGVVEACHSLGVMHRDLKPENFLFVNQQEDSLLKTIDFGLSIFFKPGDVFTDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAETEQGIFEEVLHGDLDFSSDPWPSISESAKDLVRKMLDRDPRWRLTAHQVLCHPWIHVDGVAPDKPLDSAVLSRLKQFSAMNRFKKMALRVIAESLSEEEIAGLREMFKMIDTDNSGQITFDELKAGLKRVGANIKESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKIEREDHLFAAFSYFDKDGSGYITQDELQQACVEFGVEDVHLEEMIKEIDQDNDGRIDYNEFVAMMQKGNVPGIGRKGLENSFSIGFRERHQNSSVYI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0865 579 CDD EFh 417 476 IPR002048 GO:0005509
Dere06g0865 579 SMART efh_1 488 516 IPR002048 GO:0005509
Dere06g0865 579 SMART efh_1 522 550 IPR002048 GO:0005509
Dere06g0865 579 SMART efh_1 416 444 IPR002048 GO:0005509
Dere06g0865 579 SMART efh_1 452 480 IPR002048 GO:0005509
Dere06g0865 579 Gene3D Phosphorylase Kinase; domain 1 113 196 - -
Dere06g0865 579 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
Dere06g0865 579 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Dere06g0865 579 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Dere06g0865 579 FunFam Calcium-dependent protein kinase SK5 197 381 - -
Dere06g0865 579 FunFam Calcium-dependent protein kinase 1 377 551 - -
Dere06g0865 579 MobiDBLite consensus disorder prediction 27 59 - -
Dere06g0865 579 PANTHER SERINE/THREONINE-PROTEIN KINASE 102 543 - -
Dere06g0865 579 SUPERFAMILY Protein kinase-like (PK-like) 110 370 IPR011009 -
Dere06g0865 579 SMART serkin_6 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g0865 579 Pfam Protein kinase domain 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g0865 579 CDD EFh 488 548 IPR002048 GO:0005509
Dere06g0865 579 CDD STKc_CAMK 110 368 - -
Dere06g0865 579 Gene3D - 394 554 - -
Dere06g0865 579 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
Dere06g0865 579 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Dere06g0865 579 MobiDBLite consensus disorder prediction 27 90 - -
Dere06g0865 579 FunFam Calcium-dependent protein kinase 1 113 196 - -
Dere06g0865 579 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Dere06g0865 579 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Dere06g0865 579 ProSiteProfiles EF-hand calcium-binding domain profile. 522 553 IPR002048 GO:0005509
Dere06g0865 579 Gene3D Transferase(Phosphotransferase) domain 1 197 393 - -
Dere06g0865 579 ProSiteProfiles Protein kinase domain profile. 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g0865 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Dere06g0865 579 SUPERFAMILY EF-hand 409 548 IPR011992 -
Dere06g0865 579 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Dere06g0865 579 Pfam EF-hand domain pair 487 548 IPR002048 GO:0005509
Dere06g0865 579 Pfam EF-hand domain pair 417 477 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0865 Dere-ChrDere06 15413793 15440675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0865 1 569 EF-hand Containing Proteins AT5G04870 78.232 0.0 958
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere06g0865 Pkinase 3.6e-74 CL0016