Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g0839 ATGAACAACTTTCTGCAACCTCAAGAACAAGAGCACAATTTTTTCATCTCTGGGCCTCTCTCCTACCAGACGCCATGCACTGCTGAGGGTAGAACCATATGCTCCGAACCTCCTAGATCGTCAAACTTAAGCAACAGGAAGCCGACCATAAACATAACAATCCCTCCGATGTGCTTGAGTATTGGCTCGTCGGACACCAAGGAGGACAAGCACTACCGGGGAGTCCGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGTGATCCTAATCGGAAAGGGTCGAGGCTGTGGCTTGGAACCTTCGAGACAGCCATGGAAGCAGCACAAGCATATGACAGAGCGGCCTTCAAGATGAGAGGAAGCAAAGCCATACTGAATTTCCCTCTTGAGGTTGGGGAATACAGTTCTGAAGAATCTGAATCCACCGTGGTGAAGGAGGTTGGAGAGAAAAGGAGGAGAGAGGGAGAGAGGGACGAGGAGTTGTTGAAGAAGACGGCAAAGAAGGAGAAGGAAGAGTCGACGGTTGGTCCGTTGACGCCGTCATATTGGACGGGGGTTTGGGACACTGATGTTGCGAACACTATTTTCAGTGTTCCTCCGTTATCGCCGTTATCTCCGTTAATGGTTGTTTGA 636 0.5142 MNNFLQPQEQEHNFFISGPLSYQTPCTAEGRTICSEPPRSSNLSNRKPTINITIPPMCLSIGSSDTKEDKHYRGVRRRPWGKFAAEIRDPNRKGSRLWLGTFETAMEAAQAYDRAAFKMRGSKAILNFPLEVGEYSSEESESTVVKEVGEKRRREGERDEELLKKTAKKEKEESTVGPLTPSYWTGVWDTDVANTIFSVPPLSPLSPLMVV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g0839 211 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Dere06g0839 211 CDD AP2 70 129 IPR001471 GO:0003700|GO:0006355
Dere06g0839 211 MobiDBLite consensus disorder prediction 147 175 - -
Dere06g0839 211 Gene3D AP2/ERF domain 70 132 IPR036955 GO:0003700|GO:0006355
Dere06g0839 211 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Dere06g0839 211 SUPERFAMILY DNA-binding domain 71 131 IPR016177 GO:0003677
Dere06g0839 211 MobiDBLite consensus disorder prediction 147 177 - -
Dere06g0839 211 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Dere06g0839 211 PRINTS Ethylene responsive element binding protein signature 111 131 IPR001471 GO:0003700|GO:0006355
Dere06g0839 211 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Dere06g0839 211 FunFam Ethylene-responsive transcription factor 2 70 131 - -
Dere06g0839 211 PANTHER DNA-BINDING DOMAIN 65 169 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g0839 Dere-ChrDere06 14635263 14635898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g0839 40 208 AP2-EREBP Transcription Factor Family AT5G51190 49.714 8.52e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere06g0839 AP2 1.5e-14 CL0081